python-biom-format-doc_2.1.5+dfsg-7build2_all.deb


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Description

python-biom-format-doc - documentation for BIOM format

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name python-biom-format-doc
Package version 2.1.5+dfsg
Package release 7build2
Package architecture all
Package type deb
Installed size 489 B
Download size 60.78 KB
Official Mirror archive.ubuntu.com
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
This package provides the documentation for the BIOM format Python package.

Alternatives

Package Version Architecture Repository
python-biom-format-doc_2.1.5+dfsg-7build2_all.deb 2.1.5+dfsg all Ubuntu Universe
python-biom-format-doc - - -

Requires

Name Value
libjs-sphinxdoc >= 1.0

Replaces

Name Value
python-biom-format <= 2.1+dfsg-1

Download

Type URL
Binary Package python-biom-format-doc_2.1.5+dfsg-7build2_all.deb
Source Package python-biom-format

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-biom-format-doc deb package:
    # sudo apt-get install python-biom-format-doc

Files

Path
/usr/share/doc-base/python-biom-format
/usr/share/doc/python-biom-format-doc/changelog.Debian.gz
/usr/share/doc/python-biom-format-doc/copyright
/usr/share/doc/python-biom-format-doc/examples/min_sparse_otu_table.biom
/usr/share/doc/python-biom-format-doc/examples/min_sparse_otu_table_hdf5.biom.gz
/usr/share/doc/python-biom-format-doc/examples/obs_md.txt
/usr/share/doc/python-biom-format-doc/examples/rich_sparse_otu_table.biom
/usr/share/doc/python-biom-format-doc/examples/rich_sparse_otu_table_hdf5.biom.gz
/usr/share/doc/python-biom-format-doc/examples/sam_md.txt
/usr/share/doc/python-biom-format-doc/html/BIOM_LICENSE.html
/usr/share/doc/python-biom-format-doc/html/index.html
/usr/share/doc/python-biom-format-doc/html/objects.inv
/usr/share/doc/python-biom-format-doc/html/search.html
/usr/share/doc/python-biom-format-doc/html/searchindex.js
/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png
/usr/share/doc/python-biom-format-doc/html/_sources/BIOM_LICENSE.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/index.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/adding_metadata.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/biom_conversion.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/biom_format.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/index.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/quick_usage_examples.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/summarizing_biom_tables.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/table_objects.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/format_versions/biom-1.0.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/format_versions/biom-2.0.rst.txt
/usr/share/doc/python-biom-format-doc/html/_sources/documentation/format_versions/biom-2.1.rst.txt
/usr/share/doc/python-biom-format-doc/html/_static/ajax-loader.gif
/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png
/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png
/usr/share/doc/python-biom-format-doc/html/_static/basic.css
/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png
/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png
/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png
/usr/share/doc/python-biom-format-doc/html/_static/comment-bright.png
/usr/share/doc/python-biom-format-doc/html/_static/comment-close.png
/usr/share/doc/python-biom-format-doc/html/_static/comment.png
/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js
/usr/share/doc/python-biom-format-doc/html/_static/doctools.js
/usr/share/doc/python-biom-format-doc/html/_static/down-pressed.png
/usr/share/doc/python-biom-format-doc/html/_static/down.png
/usr/share/doc/python-biom-format-doc/html/_static/file.png
/usr/share/doc/python-biom-format-doc/html/_static/haiku.css
/usr/share/doc/python-biom-format-doc/html/_static/jquery.js
/usr/share/doc/python-biom-format-doc/html/_static/minus.png
/usr/share/doc/python-biom-format-doc/html/_static/plus.png
/usr/share/doc/python-biom-format-doc/html/_static/pygments.css
/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js
/usr/share/doc/python-biom-format-doc/html/_static/underscore.js
/usr/share/doc/python-biom-format-doc/html/_static/up-pressed.png
/usr/share/doc/python-biom-format-doc/html/_static/up.png
/usr/share/doc/python-biom-format-doc/html/documentation/adding_metadata.html
/usr/share/doc/python-biom-format-doc/html/documentation/biom_conversion.html
/usr/share/doc/python-biom-format-doc/html/documentation/biom_format.html
/usr/share/doc/python-biom-format-doc/html/documentation/index.html
/usr/share/doc/python-biom-format-doc/html/documentation/quick_usage_examples.html
/usr/share/doc/python-biom-format-doc/html/documentation/summarizing_biom_tables.html
/usr/share/doc/python-biom-format-doc/html/documentation/table_objects.html
/usr/share/doc/python-biom-format-doc/html/documentation/format_versions/biom-1.0.html
/usr/share/doc/python-biom-format-doc/html/documentation/format_versions/biom-2.0.html
/usr/share/doc/python-biom-format-doc/html/documentation/format_versions/biom-2.1.html

Changelog

See python-biom-format_2.1.5+dfsg-7build2_i386.deb changelog.

See Also

Package Description
python-biom-format_2.1.5+dfsg-7build2_i386.deb Biological Observation Matrix (BIOM) format (Python 2)
python-biomaj3_3.0.20-1_all.deb biological data-bank updater (Python 2)
python-biopython-doc_1.70+dfsg-2build1_all.deb Documentation for the Biopython library
python-biopython-sql_1.70+dfsg-2build1_all.deb Biopython support for the BioSQL database schema (Python 2)
python-biopython_1.70+dfsg-2build1_i386.deb Python library for bioinformatics (implemented in Python 2)
python-biosig_1.3.0-2.2build1_i386.deb Python bindings for BioSig library
python-biotools_1.2.12-1_i386.deb Python bioinformatics utilities for high-throughput genomic sequencing
python-biplist_1.0.2-1_all.deb Python 2 library for reading/writing Mac OS X binary plists
python-bitarray_0.8.1-1build4_i386.deb Python module for efficient boolean array handling
python-bitbucket_0.1-1_all.deb Python bindings for the bitbucket.org REST API
python-bitstring-doc_3.1.5-1_all.deb Python module for manipulation of binary data (documentation)
python-bitstring_3.1.5-1_all.deb Python module for manipulation of binary data (Python 2)
python-bitstruct_3.4.0-1_all.deb Python bit pack/unpack package
python-bittorrent_3.4.2-12_all.deb Scatter-gather network file transfer
python-bjsonrpc_0.2.0-2_all.deb asynchronous bidirectional JSON-RPC protocol over TCP/IP
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