proteinortho_5.15+dfsg-1_i386.deb


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Description

proteinortho - Detection of (Co-)orthologs in large-scale protein analysis

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name proteinortho
Package version 5.15+dfsg
Package release 1
Package architecture i386
Package type deb
Installed size 382 B
Download size 247.15 KB
Official Mirror archive.ubuntu.com
Proteinortho is a stand-alone tool that is geared towards large datasets
and makes use of distributed computing techniques when run on multi-core
hardware. It implements an extended version of the reciprocal best
alignment heuristic. Proteinortho was applied to compute orthologous
proteins in the complete set of all 717 eubacterial genomes available at
NCBI at the beginning of 2009. Authors succeeded identifying thirty
proteins present in 99% of all bacterial proteomes.

Alternatives

Package Version Architecture Repository
proteinortho_5.15+dfsg-1_amd64.deb 5.15+dfsg amd64 Ubuntu Universe
proteinortho - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:3.0
libstdc++6 >= 5.2
ncbi-blast+ -
python -

Download

Type URL
Binary Package proteinortho_5.15+dfsg-1_i386.deb
Source Package proteinortho

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install proteinortho deb package:
    # sudo apt-get install proteinortho

Files

Path
/usr/bin/proteinortho5
/usr/lib/proteinortho/ffadj_mcs.py
/usr/lib/proteinortho/po2tree.pl
/usr/lib/proteinortho/proteinortho5.pl
/usr/lib/proteinortho/proteinortho5_clean_edges2.pl
/usr/lib/proteinortho/proteinortho5_clustering
/usr/lib/proteinortho/proteinortho5_singletons.pl
/usr/lib/proteinortho/proteinortho5_tree
/usr/share/doc/proteinortho/README.test
/usr/share/doc/proteinortho/changelog.Debian.gz
/usr/share/doc/proteinortho/copyright
/usr/share/doc/proteinortho/run-unit-test
/usr/share/doc/proteinortho/examples/C.faa.gz
/usr/share/doc/proteinortho/examples/C.gff.gz
/usr/share/doc/proteinortho/examples/E.faa.gz
/usr/share/doc/proteinortho/examples/E.gff.gz
/usr/share/doc/proteinortho/examples/L.faa.gz
/usr/share/doc/proteinortho/examples/L.gff
/usr/share/doc/proteinortho/examples/M.faa.gz
/usr/share/doc/proteinortho/examples/M.gff
/usr/share/doc/proteinortho/examples/chk_test.pl
/usr/share/doc/proteinortho/tools/comp_bla.pl
/usr/share/doc/proteinortho/tools/grab_proteins.pl
/usr/share/man/man1/proteinortho5.1.gz

Changelog

2016-08-29 - Andreas Tille <tille@debian.org>
proteinortho (5.15+dfsg-1) unstable; urgency=medium
* New upstream version
2016-05-04 - Andreas Tille <tille@debian.org>
proteinortho (5.13+dfsg-1) unstable; urgency=medium
* New upstream version (all patches applied upstream)
* cme fix dpkg-control
2016-03-17 - Andreas Tille <tille@debian.org>
proteinortho (5.12+dfsg-1) unstable; urgency=medium
* new upstream version
* make better use of uscan options
* cme fix dpkg-control
* Fix C-Syntax
* Apply fix from upstream to enable building the package
* Better hardening
2015-11-13 - Andreas Tille <tille@debian.org>
proteinortho (5.11+dfsg-1) unstable; urgency=low
* Initial release (Closes: #804995)

See Also

Package Description
protobuf-c-compiler_1.2.1-2_i386.deb Protocol Buffers C compiler (protobuf-c)
protobuf-compiler-grpc_1.3.2-1_i386.deb high performance general RPC framework - protobuf plugin
protracker_2.3d.r10-1_i386.deb Amiga ProTracker v2.3D clone for modern computers
prottest_3.4.2+dfsg-2_all.deb selection of best-fit models of protein evolution
prov-tools_1.5.0-2_all.deb tools for prov
prover9-doc_0.0.200902a-2_all.deb documentation for Prover9 and associated programs
prover9-mace4_0.5.dfsg-3_all.deb GUI for Prover9 and Mace4
prover9_0.0.200911a-2.1_i386.deb theorem prover and countermodel generator
proxsmtp_1.10-2.1_i386.deb multi purpose SMTP Proxy
proxychains_3.1-7_all.deb proxy chains - redirect connections through proxy servers
proxycheck_0.49a-5_i386.deb checks existence of open proxy
proxytrack_3.49.2-1_i386.deb Build HTTP Caches using archived websites copied by HTTrack
proxytunnel_1.9.0+svn250-6_i386.deb Create tcp tunnels trough HTTPS proxies, for using with SSH
prt_0.19-2_all.deb Command line Perl Refactoring Tool
pry_0.10.3-2_all.deb powerful irb alternative and runtime developer console
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