poretools_0.6.0+dfsg-2_all.deb


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Description

poretools - toolkit for nanopore nucleotide sequencing data

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name poretools
Package version 0.6.0+dfsg
Package release 2
Package architecture all
Package type deb
Installed size 116 B
Download size 18.62 KB
Official Mirror archive.ubuntu.com
poretools is a flexible toolkit for exploring datasets generated by nanopore
sequencing devices from MinION for the purposes of quality control and
downstream analysis. Poretools operates directly on the native FAST5 (a
variant of the HDF5 standard) file format produced by ONT and provides a
wealth of format conversion utilities and data exploration and visualization
tools.

Alternatives

Package Version Architecture Repository
poretools_0.6.0+dfsg-2_all.deb 0.6.0+dfsg all Ubuntu Universe
poretools - - -

Requires

Name Value
python-h5py -
python-matplotlib -
python-pandas -
python-pkg-resources -
python-seaborn -
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package poretools_0.6.0+dfsg-2_all.deb
Source Package poretools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install poretools deb package:
    # sudo apt-get install poretools

Files

Path
/usr/bin/poretools
/usr/lib/python2.7/dist-packages/poretools/Event.py
/usr/lib/python2.7/dist-packages/poretools/Fast5File.py
/usr/lib/python2.7/dist-packages/poretools/__init__.py
/usr/lib/python2.7/dist-packages/poretools/combine.py
/usr/lib/python2.7/dist-packages/poretools/events.py
/usr/lib/python2.7/dist-packages/poretools/fasta.py
/usr/lib/python2.7/dist-packages/poretools/fastq.py
/usr/lib/python2.7/dist-packages/poretools/formats.py
/usr/lib/python2.7/dist-packages/poretools/hist.py
/usr/lib/python2.7/dist-packages/poretools/index.py
/usr/lib/python2.7/dist-packages/poretools/metadata.py
/usr/lib/python2.7/dist-packages/poretools/nucdist.py
/usr/lib/python2.7/dist-packages/poretools/occupancy.py
/usr/lib/python2.7/dist-packages/poretools/organise.py
/usr/lib/python2.7/dist-packages/poretools/poretools_main.py
/usr/lib/python2.7/dist-packages/poretools/qual_v_pos.py
/usr/lib/python2.7/dist-packages/poretools/qualdist.py
/usr/lib/python2.7/dist-packages/poretools/readstats.py
/usr/lib/python2.7/dist-packages/poretools/squiggle.py
/usr/lib/python2.7/dist-packages/poretools/statistics.py
/usr/lib/python2.7/dist-packages/poretools/stats.py
/usr/lib/python2.7/dist-packages/poretools/tabular.py
/usr/lib/python2.7/dist-packages/poretools/times.py
/usr/lib/python2.7/dist-packages/poretools/version.py
/usr/lib/python2.7/dist-packages/poretools/winner.py
/usr/lib/python2.7/dist-packages/poretools/yield_plot.py
/usr/lib/python2.7/dist-packages/poretools-0.6.0.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/poretools-0.6.0.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/poretools-0.6.0.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/poretools-0.6.0.egg-info/not-zip-safe
/usr/lib/python2.7/dist-packages/poretools-0.6.0.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/poretools-0.6.0.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/poretools/scripts/__init__.py
/usr/lib/python2.7/dist-packages/poretools/scripts/poretools-script.py
/usr/share/doc/poretools/README.md
/usr/share/doc/poretools/changelog.Debian.gz
/usr/share/doc/poretools/copyright
/usr/share/man/man1/poretools.1.gz

Changelog

2016-12-17 - Afif Elghraoui <afif@debian.org>
poretools (0.6.0+dfsg-2) unstable; urgency=low
* new binary package: poretools-data
* Clean up d/rules
2016-09-04 - Afif Elghraoui <afif@debian.org>
poretools (0.6.0+dfsg-1) unstable; urgency=medium
* Imported Upstream version 0.6.0+dfsg
- Update package dependencies
* Reformat debian/watch
* Exclude Dockerfile and windows executables from source distribution
(Closes: #836553)
* Update email address and copyright year
* Bump Standards-Version
* Use encrypted protocols for Vcs URLs
2016-02-03 - Afif Elghraoui <afif@ghraoui.name>
poretools (0.5.1-1) unstable; urgency=low
* Initial release (Closes: #811154)

See Also

Package Description
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portaudio19-doc_19.6.0-1_all.deb Portable audio I/O - documentation
portreserve_0.0.4-1_i386.deb Port reservation program
portsentry_1.2-14_i386.deb Portscan detection daemon
posh_0.12.6_i386.deb Policy-compliant Ordinary SHell
posixtestsuite_1.5.2-6_i386.deb POSIX conformance test suite report log
post-el_2.6-1_all.deb emacs major mode for editing mail
post-faq_0.10-21_all.deb post periodic FAQs to Usenet newsgroups
postal_0.75_i386.deb SMTP benchmark - the mad postman
postbooks-schema-common_4.10.1-1_all.deb multi-user accounting / CRM / ERP suite (demo database)
postbooks-schema-demo_4.10.1-1_all.deb multi-user accounting / CRM / ERP suite (demo database)
postbooks-schema-empty_4.10.1-1_all.deb multi-user accounting / CRM / ERP suite (empty database)
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