pirs-examples_2.0.2+dfsg-6_all.deb


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Description

pirs-examples - profile basd Illumina pair-end Reads Simulator (example data)

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name pirs-examples
Package version 2.0.2+dfsg
Package release 6
Package architecture all
Package type deb
Installed size 1.87 KB
Download size 1.85 MB
Official Mirror archive.ubuntu.com
The program pIRS can be used for simulating Illumina PE reads, with a
series of characters generated by Illumina sequencing platform, such as
insert size distribution, sequencing error(substitution, insertion,
deletion), quality score and GC content-coverage bias.
The insert size follows a normal distribution, so users should set the
mean value and standard deviation. Usually the standard deviation is set
as 1/20 of the mean value. The normal distribution by Box-Muller method
is simulated.
The program simulates sequencing error, quality score and GC content-
coverage bias according to the empirical distribution profile. Some
default profiles counted from lots of real sequencing data are provided.
To simulate reads from diploid genome, users should simulate the diploid
genome sequence firstly by setting the ratio of heterozygosis SNP,
heterozygosis InDel and structure variation.
This package contains some example data.

Alternatives

Package Version Architecture Repository
pirs-examples_2.0.2+dfsg-6_all.deb 2.0.2+dfsg all Ubuntu Universe
pirs-examples - - -

Download

Type URL
Binary Package pirs-examples_2.0.2+dfsg-6_all.deb
Source Package pirs

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pirs-examples deb package:
    # sudo apt-get install pirs-examples

Files

Path
/usr/share/doc/pirs-examples/changelog.Debian.gz
/usr/share/doc/pirs-examples/copyright
/usr/share/doc/pirs/examples/gcContCvgBias/gcdeptest.depth.gz
/usr/share/doc/pirs/examples/pirs/ref_seq.fa.gz

Changelog

See pirs_2.0.2+dfsg-6_i386.deb changelog.

See Also

Package Description
pirs-profiles_2.0.2+dfsg-6_all.deb profile basd Illumina pair-end Reads Simulator (profile data)
pirs_2.0.2+dfsg-6_i386.deb Profile based Illumina pair-end Reads Simulator
pisg_0.73-1_all.deb Perl IRC Statistics Generator
pithos_1.1.2-1_all.deb Pandora Radio client for the GNOME desktop
pitivi_0.98.1-3build1_i386.deb non-linear audio/video editor using GStreamer
piuparts-common_0.78_all.deb common piuparts components
piuparts-master_0.78_all.deb piuparts master components
piuparts-slave_0.78_all.deb piuparts slave components
piuparts_0.78_all.deb .deb package installation, upgrading, and removal testing tool
pius_2.2.4-1_all.deb Tools to help before and after key-signing parties
piwi_0.8+20041206-4_all.deb P(erl|relude) IDS Web Interface - A frontend to your Prelude database
pixbros_0.6.3+dfsg-0.1_i386.deb 2D game inspired in Bubble Bobble, Snow Bros and Tumble Pop
pixelize_1.0.0-1_i386.deb Create an image consisting of many small images
pixelmed-apps_20150917-1_all.deb DICOM implementation containing Image Viewer and a ECG Viewer - jnlp
pixelmed-webstart-apps_20150917-1_all.deb DICOM implementation containing Image Viewer and a ECG Viewer - jnlp
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