phybin_0.3-1_i386.deb


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Description

phybin - binning/clustering newick trees by topology

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name phybin
Package version 0.3
Package release 1
Package architecture i386
Package type deb
Installed size 9.69 KB
Download size 1.59 MB
Official Mirror archive.ubuntu.com
PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).

Alternatives

Package Version Architecture Repository
phybin_0.3-1_amd64.deb 0.3 amd64 Ubuntu Universe
phybin - - -

Requires

Name Value
libc6 >= 2.15
libffi6 >= 3.0.4
libgmp10 -

Download

Type URL
Binary Package phybin_0.3-1_i386.deb
Source Package phybin

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install phybin deb package:
    # sudo apt-get install phybin

Files

Path
/usr/bin/phybin
/usr/share/doc/phybin/changelog.Debian.gz
/usr/share/doc/phybin/copyright
/usr/share/lintian/overrides/phybin
/usr/share/man/man1/phybin.1.gz

Changelog

2015-12-18 - Andreas Tille <tille@debian.org>
phybin (0.3-1) unstable; urgency=low
* Initial release (Closes: #808326)

See Also

Package Description
phylip-doc_3.696+dfsg-5_all.deb package of programs for inferring phylogenies (documentation)
phylip_3.696+dfsg-5_i386.deb package of programs for inferring phylogenies
phyml_3.3.20170530+dfsg-2_i386.deb Phylogenetic estimation using Maximum Likelihood
physamp_1.0.2-1_i386.deb sample sequence alignment according to its corresponding phylogenetic tree
physlock_11-1_i386.deb lightweight Linux console locking tool
phyutility_2.7.3-1_i386.deb simple analyses or modifications on both phylogenetic trees and data matrices
pi_1.3.4-2_i386.deb Compute Archimedes' constant Pi to arbitrary precision
pia_3.103-4build1_i386.deb movie player for xawtv
pianobar_2017.08.30-1_i386.deb console based player for Pandora radio
pianobooster_0.6.7~svn156-1_i386.deb learn the piano just by playing a game
picard-tools_2.8.1+dfsg-2_all.deb Command line tools to manipulate SAM and BAM files
picard_1.4.2-1_i386.deb Next-Generation MusicBrainz audio files tagger
pick_1.8.0-1_i386.deb utility to choose one option from a set of choices
picmi_17.04.3-0ubuntu1_i386.deb Number logic game
picocom_2.2-2_i386.deb minimal dumb-terminal emulation program
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