perm - efficient mapping of short reads with periodic spaced seeds

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name perm
Package version 0.4.0
Package release 3
Package architecture i386
Package type deb
Installed size 380 B
Download size 137.59 KB
Official Mirror
PerM is a software package which was designed to perform highly efficient
genome scale alignments for hundreds of millions of short reads produced by
the ABI SOLiD and Illumina sequencing platforms. Today PerM is capable of
providing full sensitivity for alignments within 4 mismatches for 50bp SOLID
reads and 9 mismatches for 100bp Illumina reads.


Package Version Architecture Repository
perm_0.4.0-3_amd64.deb 0.4.0 amd64 Ubuntu Universe
perm - - -


Name Value
libc6 >= 2.4
libgcc1 >= 1:3.4
libgomp1 >= 4.9
libstdc++6 >= 5.2


Type URL
Binary Package perm_0.4.0-3_i386.deb
Source Package perm

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install perm deb package:
    # sudo apt-get install perm




2017-08-21 - Andreas Tille <>
perm (0.4.0-3) unstable; urgency=medium
* Fix gcc7 issue
Closes: #853609
* Standards-Version: 4.0.1 (no changes needed)
* Remove inactive Uploaders
2017-01-19 - Andreas Tille <>
perm (0.4.0-2) unstable; urgency=medium
* Moved packaging to Git since source code vanished otherwise and
it thus becomes more handy
* cme fix dpkg-control
* Use as homepage which is somehow
wrong but at least gives some information - better than the vanished
googlecode page
* Update d/copyright
* fake watch file
* debhelper 10
* Fix spelling
* hardening=+all
2014-04-25 - Andreas Tille <>
perm (0.4.0-1) unstable; urgency=medium
* Initial upload to Debian (Closes: #745847)
2014-04-25 - Tim Booth <>
perm (0.4.0-0biolinux1) trusty; urgency=low
* New upstream and build for Trusty
2012-03-08 - H. Soon Gweon (Key for package building) <>
perm (0.3.9-1ubuntu2) lucid; urgency=low
* Added a symlink as the program is often called by the name of "PerM" rather than "perm"
2012-01-05 - H. Soon Gweon (Key for package building) <>
perm (0.3.9-1ubuntu1) lucid; urgency=low
* Package for PPA 
2012-01-05 - H. Soon Gweon (Key for package building) <>
perm (0.3.9-1) unstable; urgency=low
* Initial release

See Also

Package Description
persistent-cache-cpp-dev_1.0.4+16.10.20160823-0ubuntu3_i386.deb Cache of key-value pairs with persistent storage for C++ 11
persistent-cache-cpp-doc_1.0.4+16.10.20160823-0ubuntu3_all.deb Documentation for persistent-cache-cpp-dev
pescetti_0.5-2_all.deb Bridge Pseudo-duplimate generator
pesign_0.112-4_i386.deb Signing utility for UEFI binaries
petit_1.1.1-1_all.deb log analysis tool for syslog, apache and raw log files
petitboot-twin_13. Twin GUI version of petitboot, a kexec based bootloader
petitboot_13. ncurses version of petitboot, a kexec based bootloader
petname_2.7-0ubuntu1_all.deb generate pronouncable, perhaps even memorable, pet names
petri-foo_0.1.87-4_i386.deb MIDI controllable audio sampler - successor of specimen
petris_1.0.1-10_i386.deb Peter's Tetris - a Tetris(TM) clone
petsc-dev_3.7.6+dfsg1-3build1_all.deb Virtual package depending on latest PETSc development package
petsc3.7.6-doc_3.7.6+dfsg1-3build1_all.deb Documentation and examples for PETSc
pev_0.80-3_i386.deb text-based tool to analyze PE files
pex_1.1.14-2ubuntu2_all.deb library for generating Python executable zip files
pexec_1.0~rc8-3_i386.deb Executing commands in parallel