perlprimer_1.2.3-1_all.deb


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Description

perlprimer - Graphical design of primers for PCR

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name perlprimer
Package version 1.2.3
Package release 1
Package architecture all
Package type deb
Installed size 438 B
Download size 84.96 KB
Official Mirror archive.ubuntu.com
PerlPrimer is a free, open-source GUI application written in Perl that designs
primers for standard Polymerase Chain Reaction (PCR), bisulphite PCR,
real-time PCR (QPCR) and sequencing. It aims to automate and simplify the
process of primer design.
If operated online, the tool nicely communicates with the Ensembl
project for further insights into the gene structure, i.e., allowing
for taking the location of exons and introns into account for the design
of the primers.  The sequences themselves can be retrieved, too.

Alternatives

Package Version Architecture Repository
perlprimer_1.2.3-1_all.deb 1.2.3 all Ubuntu Universe
perlprimer - - -

Requires

Name Value
libwww-perl -
perl-tk -

Download

Type URL
Binary Package perlprimer_1.2.3-1_all.deb
Source Package perlprimer

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install perlprimer deb package:
    # sudo apt-get install perlprimer

Files

Path
/usr/bin/perlprimer
/usr/share/applications/perlprimer.desktop
/usr/share/doc/perlprimer/README.Debian
/usr/share/doc/perlprimer/README.md
/usr/share/doc/perlprimer/changelog.Debian.gz
/usr/share/doc/perlprimer/copyright
/usr/share/doc/perlprimer/reference
/usr/share/man/man1/perlprimer.1.gz
/usr/share/mime/packages/perlprimer.xml
/usr/share/perlprimer/gcg.603
/usr/share/perlprimer/perlprimer.svg

Changelog

2017-01-22 - Charles Plessy <plessy@debian.org>
perlprimer (1.2.3-1) unstable; urgency=medium
00b28ba New upstream version 1.2.3, closes: #708477.
840bfa2 Simplify packaging as .pl suffix was dropped upstream.
90fbf5e Delete patches, applied upstream.
f700242 Remove outdated Watch field in d/u/metadata.
d35bd09 Removed Debhelper file d/perlprimer-doc.dirs (implicit).
c37612a Adapt d/perlprimer.docs to upstream changes.
6ae70e7 Use HTTPS URL for debian/copyright.
a066529 Minor format update of the gbp configuration file.
7cdcd1e Update icon to display full size and be specific to PerlPrimer.
2016-12-12 - Andreas Tille <tille@debian.org>
perlprimer (1.1.21-4) unstable; urgency=medium
* Provide SVG icon for menu
Closes: #708480
* Do not explicitly mention quilt in README.source
* debhelper 10
* replace cdbs by dh
* d/watch: version=4
2016-07-02 - Canberk Koç <canberkkoc@gmail.com>
perlprimer (1.1.21-3) unstable; urgency=medium
* Team upload
[ James McCoy ]
8803540 Move debian/upstream to debian/upstream/metadata
[ Charles Plessy ]
9c04256 Delete mailcap file; rely on the conversion from the FreeDesktop
file instead.
9e25964 tutorial.html: remove remote link (potential privacy breach).
038a4d0 debian/source/options: set single-debian-patch to modify upstream
files directly.
[ Canberk Koç ]
* debian/patches/fixarray.patch: Array error fixed
LP: 1575074
[ Andreas Tille ]
* cme fix dpkg-control
* remove menu file
* fix spelling
* Enhance desktop file
2014-01-25 - Charles Plessy <plessy@debian.org>
perlprimer (1.1.21-2) unstable; urgency=medium
[ Steffen Moeller ]
8f8aacf Fixed a series of errors indicated by current Perl.
[ Charles Plessy ]
5655f4e Use Debhelper 9.
f923d80 Normalised VCS URLs.
2cc95e8 Normalised debian/control with cme
2cc95e8 Removed DM-Upload-Allowed field
2cc95e8 Conforms with latest Policy.
232a761 Added keywords to the FreeDesktop menu entry.
2011-11-25 - Charles Plessy <plessy@debian.org>
perlprimer (1.1.21-1) unstable; urgency=low
0b963e8 New upstream release restoring Ensembl compatibility.
b212da5 Removed 10-perlprimer.diff, applied upstream, and whole patch system
ec6fcdf Corrected VCS-Git URL in debian/control.
fa968ca Mark the use of git-buildpackage by adding its configuration file.
ab18a22 Complies with Policy 3.9.2 (no changes needed).
bdb7ebb Corrected and normalised Debian copyright file with config-edit.
2011-02-27 - Charles Plessy <plessy@debian.org>
perlprimer (1.1.20-1) unstable; urgency=low
* New upstream release:
- Ensembl compatibility restored again,
- Error corrected in calculation of melting temperature.
* Source package maintained with Git (debian/control).
* Switch to format 3.0 (quilt) to use pristine upstream bzipped archive.
* Incremented Standards-Version to 3.9.1 indicate conformance with the
latest Policy (debian/control, no changes needed).
* debian/copyright updated and reformatted to DEP-5 format.
* Using Debhelper 8 (debian/control, debian/compat).
* Added instructions and data for testing (test.ppr, README.test).
2010-03-21 - Charles Plessy <plessy@debian.org>
perlprimer (1.1.19-1) unstable; urgency=low
* New upstream release: Ensembl compatibility restored again.
* Incremented Standards-Version to 3.8.4 indicate conformance with the
latest Policy (debian/control, no changes needed).
* Corrected description of debian/patches/10-perlprimer.diff to comply with
the DEP-3 standard.
* Corrected debian/README.source (this package uses quilt, not dpatch).
2009-10-12 - Charles Plessy <plessy@debian.org>
perlprimer (1.1.18-1) unstable; urgency=low
* New upstream release:
- Ensembl compatibility once again restored.
- Many new Ensembl genome species added.
* Incremented Standards-Version to 3.8.3 to indicate conformance with the
latest Policy (debian/control, no changes needed).
* Added various informations in debian/upstream-metadata.yaml
* Refreshed debian/copyright.

See Also

Package Description
perlqt-dev_4.14.1-0ubuntu9_i386.deb Development files for PerlQt4
perlrdf_0.004-3_all.deb RDF command line utils
perltidy_20140328-2_all.deb Perl script indenter and reformatter
perm_0.4.0-3_i386.deb efficient mapping of short reads with periodic spaced seeds
persistent-cache-cpp-dev_1.0.4+16.10.20160823-0ubuntu3_i386.deb Cache of key-value pairs with persistent storage for C++ 11
persistent-cache-cpp-doc_1.0.4+16.10.20160823-0ubuntu3_all.deb Documentation for persistent-cache-cpp-dev
pescetti_0.5-2_all.deb Bridge Pseudo-duplimate generator
pesign_0.112-4_i386.deb Signing utility for UEFI binaries
petit_1.1.1-1_all.deb log analysis tool for syslog, apache and raw log files
petitboot-twin_13.05.29.14.00-g4dc604b-1ubuntu1_i386.deb Twin GUI version of petitboot, a kexec based bootloader
petitboot_13.05.29.14.00-g4dc604b-1ubuntu1_i386.deb ncurses version of petitboot, a kexec based bootloader
petname_2.7-0ubuntu1_all.deb generate pronouncable, perhaps even memorable, pet names
petri-foo_0.1.87-4_i386.deb MIDI controllable audio sampler - successor of specimen
petris_1.0.1-10_i386.deb Peter's Tetris - a Tetris(TM) clone
petsc-dev_3.7.6+dfsg1-3build1_all.deb Virtual package depending on latest PETSc development package
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