pbsim_1.0.3-3_i386.deb


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Description

pbsim - simulator for PacBio sequencing reads

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name pbsim
Package version 1.0.3
Package release 3
Package architecture i386
Package type deb
Installed size 95 B
Download size 24.23 KB
Official Mirror archive.ubuntu.com
PacBio DNA sequencers produce two types of characteristic reads: CCS
(short and low error rate) and CLR (long and high error rate), both of
which could be useful for de novo assembly of genomes. PBSIM simulates
those PacBio reads from a reference sequence by using either a model-based
or sampling-based simulation. Simulated reads are useful, for example, when
developing or evaluating sequence assemblers targeted at PacBio data.

Alternatives

Package Version Architecture Repository
pbsim_1.0.3-3_amd64.deb 1.0.3 amd64 Ubuntu Universe
pbsim - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.2

Download

Type URL
Binary Package pbsim_1.0.3-3_i386.deb
Source Package pbsim

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pbsim deb package:
    # sudo apt-get install pbsim

Files

Path
/usr/bin/pbsim
/usr/share/doc-base/pbsim
/usr/share/doc-base/pbsim-doc
/usr/share/doc/pbsim/README.gz
/usr/share/doc/pbsim/changelog.Debian.gz
/usr/share/doc/pbsim/copyright
/usr/share/man/man1/pbsim.1.gz
/usr/share/pbsim/models/model_qc_ccs
/usr/share/pbsim/models/model_qc_clr

Changelog

2017-01-31 - Sascha Steinbiss <satta@debian.org>
pbsim (1.0.3-3) unstable; urgency=medium
* Fix compiling with GCC 7.
* Update uploader email address.
* Bump Standards-Version.
2016-03-17 - Sascha Steinbiss <sascha@steinbiss.name>
pbsim (1.0.3-2) unstable; urgency=medium
* switch man page building to asciidoctor from ronn
- get reproducible output
- ronn is unmaintained
* bump Standards-Version
* enable full hardening
* disable watchfile
2016-01-24 - Sascha Steinbiss <sascha@steinbiss.name>
pbsim (1.0.3-1) unstable; urgency=low
* Initial release (Closes: #812526)

See Also

Package Description
pbsuite_15.8.24+dfsg-2_all.deb software for Pacific Biosciences sequencing data
pbuilder-scripts_22_all.deb Wrapper scripts for pbuilder
pbzip2_1.1.9-1_i386.deb parallel bzip2 implementation
pcal_4.11.0-3_i386.deb generate Postscript calendars without X
pcalendar_3.4.1-1_all.deb track menstrual cycles and predict fertility periods
pcapfix_1.1.0-2_i386.deb repairs broken pcap and pcapng files
pcaputils_0.8-1_i386.deb specialized libpcap utilities
pcb-common_20140316-3.1_all.deb printed circuit board (pcb) design program - common files
pcb-gtk_20140316-3.1_i386.deb printed circuit board (pcb) design program - GTK+ interface
pcb-lesstif_20140316-3.1_i386.deb printed circuit board (pcb) design program - LessTif interface
pcb-rnd_1.2.5-1_i386.deb Printed circuit board layout tool
pcb2gcode_1.1.4-git20120902-1.1build1_i386.deb command-line tool for engraving PCBs using CNCs
pcb_20140316-3.1_all.deb printed circuit board (pcb) design program - meta-package
pccts_1.33MR33-6_i386.deb The Purdue Compiler Construction Tool Set (PCCTS)
pcf2bdf_1.05-1_i386.deb convert X11 font from PCF to BDF format
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