pbjelly_15.8.24+dfsg-2_all.deb


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Description

pbjelly - genome assembly upgrading tool

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name pbjelly
Package version 15.8.24+dfsg
Package release 2
Package architecture all
Package type deb
Installed size 1.30 KB
Download size 1.15 MB
Official Mirror archive.ubuntu.com
PBJelly is a highly automated pipeline that aligns long sequencing
reads (such as PacBio RS reads or long 454 reads in fasta format)
to high-confidence draft assembles. PBJelly fills or reduces as
many captured gaps as possible to produce upgraded draft genomes.
PBJelly is part of the PBSuite.

Alternatives

Package Version Architecture Repository
pbjelly_15.8.24+dfsg-2_all.deb 15.8.24+dfsg all Ubuntu Universe
pbjelly - - -

Requires

Name Value
blasr >= 5.3
python-networkx -
python-pbsuite-utils = 15.8.24+dfsg-2
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package pbjelly_15.8.24+dfsg-2_all.deb
Source Package pbsuite

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pbjelly deb package:
    # sudo apt-get install pbjelly

Files

Path
/usr/bin/Jelly
/usr/bin/Jelly.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/Assembly.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/Collection.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/Extraction.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/GetSubs.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/Jelly.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/QFix.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/Setup.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/Stages.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/Support.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/__init__.py
/usr/lib/python2.7/dist-packages/pbsuite/jelly/m4pie.py
/usr/share/doc/pbjelly/JellyReadme.txt.gz
/usr/share/doc/pbjelly/changelog.Debian.gz
/usr/share/doc/pbjelly/copyright
/usr/share/doc/pbjelly/examples/Protocol.xml
/usr/share/doc/pbjelly/examples/TemplateProtocol.xml
/usr/share/doc/pbjelly/examples/data/reads/filtered_subreads.fastq.gz
/usr/share/doc/pbjelly/examples/data/reference/lambda.fasta.gz
/usr/share/man/man1/Jelly.1.gz
/usr/share/man/man1/Jelly.py.1.gz

Changelog

See pbsuite_15.8.24+dfsg-2_all.deb changelog.

See Also

Package Description
pbnj_2.04-4.1_all.deb a suite of tools to monitor changes on a network
pbsim_1.0.3-3_i386.deb simulator for PacBio sequencing reads
pbsuite_15.8.24+dfsg-2_all.deb software for Pacific Biosciences sequencing data
pbuilder-scripts_22_all.deb Wrapper scripts for pbuilder
pbzip2_1.1.9-1_i386.deb parallel bzip2 implementation
pcal_4.11.0-3_i386.deb generate Postscript calendars without X
pcalendar_3.4.1-1_all.deb track menstrual cycles and predict fertility periods
pcapfix_1.1.0-2_i386.deb repairs broken pcap and pcapng files
pcaputils_0.8-1_i386.deb specialized libpcap utilities
pcb-common_20140316-3.1_all.deb printed circuit board (pcb) design program - common files
pcb-gtk_20140316-3.1_i386.deb printed circuit board (pcb) design program - GTK+ interface
pcb-lesstif_20140316-3.1_i386.deb printed circuit board (pcb) design program - LessTif interface
pcb-rnd_1.2.5-1_i386.deb Printed circuit board layout tool
pcb2gcode_1.1.4-git20120902-1.1build1_i386.deb command-line tool for engraving PCBs using CNCs
pcb_20140316-3.1_all.deb printed circuit board (pcb) design program - meta-package
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