pbalign_0.3.0-1_all.deb


Advertisement

Description

pbalign - map Pacific Biosciences reads to reference DNA sequences

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name pbalign
Package version 0.3.0
Package release 1
Package architecture all
Package type deb
Installed size 33 B
Download size 6.87 KB
Official Mirror archive.ubuntu.com
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
This package is part of the SMRTAnalysis suite.

Alternatives

Package Version Architecture Repository
pbalign_0.3.0-1_all.deb 0.3.0 all Ubuntu Universe
pbalign - - -

Requires

Name Value
blasr >= 5.3+0
python-pbalign -
python-pkg-resources -
python:any -

Download

Type URL
Binary Package pbalign_0.3.0-1_all.deb
Source Package pbalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pbalign deb package:
    # sudo apt-get install pbalign

Files

Path
/usr/bin/createChemistryHeader
/usr/bin/createChemistryHeader.py
/usr/bin/extractUnmappedSubreads
/usr/bin/extractUnmappedSubreads.py
/usr/bin/loadChemistry
/usr/bin/loadChemistry.py
/usr/bin/maskAlignedReads
/usr/bin/maskAlignedReads.py
/usr/bin/pbalign
/usr/share/doc/pbalign/README.md
/usr/share/doc/pbalign/changelog.Debian.gz
/usr/share/doc/pbalign/copyright
/usr/share/man/man1/createChemistryHeader.1.gz
/usr/share/man/man1/createChemistryHeader.py.1.gz
/usr/share/man/man1/extractUnmappedSubreads.1.gz
/usr/share/man/man1/extractUnmappedSubreads.py.1.gz
/usr/share/man/man1/loadChemistry.1.gz
/usr/share/man/man1/loadChemistry.py.1.gz
/usr/share/man/man1/maskAlignedReads.1.gz
/usr/share/man/man1/maskAlignedReads.py.1.gz
/usr/share/man/man1/pbalign.1.gz

Changelog

2017-01-15 - Afif Elghraoui <afif@debian.org>
pbalign (0.3.0-1) unstable; urgency=medium
* New upstream release (corresponds to smrtanalysis-4.0.0 tag)
* Readability improvements and clean-ups in d/control and d/rules
* Update email address and copyright year
* Bump Standards-Version to 3.9.8
* Use encrypted protocols for VCS URLs
* Add build-dependency on pbcommand
* Drop patch applied upstream
* Don't install LICENSES file
* Set blasr minimum version
2015-09-07 - Afif Elghraoui <afif@ghraoui.name>
pbalign (0.2.0-1) unstable; urgency=low
* Initial release (Closes: #797675)

See Also

Package Description
pbgenomicconsensus_2.1.0-1_all.deb Pacific Biosciences variant and consensus caller
pbh5tools_0.8.0+dfsg-5build1_all.deb tools for manipulating Pacific Biosciences HDF5 files
pbhoney_15.8.24+dfsg-2_all.deb genomic structural variation discovery
pbjelly_15.8.24+dfsg-2_all.deb genome assembly upgrading tool
pbnj_2.04-4.1_all.deb a suite of tools to monitor changes on a network
pbsim_1.0.3-3_i386.deb simulator for PacBio sequencing reads
pbsuite_15.8.24+dfsg-2_all.deb software for Pacific Biosciences sequencing data
pbuilder-scripts_22_all.deb Wrapper scripts for pbuilder
pbzip2_1.1.9-1_i386.deb parallel bzip2 implementation
pcal_4.11.0-3_i386.deb generate Postscript calendars without X
pcalendar_3.4.1-1_all.deb track menstrual cycles and predict fertility periods
pcapfix_1.1.0-2_i386.deb repairs broken pcap and pcapng files
pcaputils_0.8-1_i386.deb specialized libpcap utilities
pcb-common_20140316-3.1_all.deb printed circuit board (pcb) design program - common files
pcb-gtk_20140316-3.1_i386.deb printed circuit board (pcb) design program - GTK+ interface
Advertisement
Advertisement