transtermhp_2.09-2_i386.deb


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Description

transtermhp - find rho-independent transcription terminators in bacterial genomes

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name transtermhp
Package version 2.09
Package release 2
Package architecture i386
Package type deb
Installed size 407 B
Download size 116.78 KB
Official Mirror archive.ubuntu.com
TransTermHP finds rho-independent transcription terminators in
bacterial genomes. Each terminator found by the program is assigned a
confidence value that estimates its probability of being a true
terminator. TransTermHP is the successor of TransTerm which was using
very different search and scoring algorithms.

Alternatives

Package Version Architecture Repository
transtermhp_2.09-2_amd64.deb 2.09 amd64 Ubuntu Universe
transtermhp - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.6

Download

Type URL
Binary Package transtermhp_2.09-2_i386.deb
Source Package transtermhp

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install transtermhp deb package:
    # sudo apt-get install transtermhp

Files

Path
/usr/bin/2ndscore
/usr/bin/transterm
/usr/share/doc/transtermhp/README.Debian
/usr/share/doc/transtermhp/RELEASE-NOTES.txt
/usr/share/doc/transtermhp/USAGE.txt.gz
/usr/share/doc/transtermhp/changelog.Debian.gz
/usr/share/doc/transtermhp/copyright
/usr/share/doc/transtermhp/examples/calibrate.sh
/usr/share/doc/transtermhp/examples/make_expterm.py.gz
/usr/share/doc/transtermhp/examples/mfold_rna.sh
/usr/share/doc/transtermhp/examples/random_fasta.py
/usr/share/man/man1/2ndscore.1.gz
/usr/share/man/man1/transterm.1.gz
/usr/share/transtermhp/expterm.dat

Changelog

2013-11-18 - Andreas Tille <tille@debian.org>
transtermhp (2.09-2) unstable; urgency=low
[ Charles Plessy ]
* debian/upstream (renamed from upstream-metadata.yaml
[ Andreas Tille ]
* debian/upstream:
- Fixed typo (s/TITILE/TITLE/)
- Moved DOI+PMID to references
- Added Volume, Number, Pages
- BibTeX conform authors
* debian/copyright:
- DEP5
- Add Files-Excluded to document what was removed from original source
* debian/watch: handle +dfsg suffix
* debian/control:
- cme fix dpkg-control
- debhelper 9
- canonical Vcs fields
* debian/patches/hardening.patch: Propagate hardening flags
2011-10-28 - Andreas Tille <tille@debian.org>
transtermhp (2.09-1) unstable; urgency=low
[ Alex Mestiashvili ]
* New upstream release. 
[ Andreas Tille ]
* Standards-Version: 3.9.2 (no changes needed)
* Debhelper 8 (compat+control)
* Fixed Vcs fields
* Stripped citation from long descriptions because it can be found in
debian/upstream-metadata.yaml
2011-02-19 - Alex Mestiashvili <alex@biotec.tu-dresden.de>
transtermhp (2.07-1) unstable; urgency=low
* Initial release (Closes: #614382)

See Also

Package Description
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trayer_1.1.5-1_i386.deb Lightweight GTK2-based systray for UNIX desktop
tre-agrep_0.8.0-4_i386.deb approximate grep utility based on the tre library
tree-ppuzzle_5.2-8build1_i386.deb Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc_5.2-8build1_all.deb Reconstruction of phylogenetic trees by maximum likelihood (doc)
tree-puzzle_5.2-8build1_i386.deb Reconstruction of phylogenetic trees by maximum likelihood
tree_1.7.0-3_i386.deb displays an indented directory tree, in color
treeline_1.4.1-1.1_all.deb versatile tree-like structured custom data manager
treesheets_20150702~git1c77449b-1build1_i386.deb Data organizer that covers spreadsheets, mind mappers, and small databases
treetop_1.6.3-1_all.deb Ruby-based text parsing and interpretation (command-line utility)
treeviewx_0.5.1+20100823-3build1_i386.deb Displays and prints phylogenetic trees
treil_1.8-2.2build2_i386.deb tree structure into tiles
trend_1.3-1_i386.deb general-purpose, efficient trend graph
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