transtermhp_2.09-2_i386.deb


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Description

transtermhp - find rho-independent transcription terminators in bacterial genomes

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: transtermhp
Package version: 2.09
Package release: 2
Package architecture: i386
Package type: deb
Installed size: 407 B
Download size: 116.78 KB
Official Mirror: archive.ubuntu.com
TransTermHP finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is the successor of TransTerm which was using very different search and scoring algorithms.

Alternatives

    Download

    Source package: transtermhp

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install transtermhp deb package:
      # sudo apt-get install transtermhp

    Files

    • /usr/bin/2ndscore
    • /usr/bin/transterm
    • /usr/share/doc/transtermhp/README.Debian
    • /usr/share/doc/transtermhp/RELEASE-NOTES.txt
    • /usr/share/doc/transtermhp/USAGE.txt.gz
    • /usr/share/doc/transtermhp/changelog.Debian.gz
    • /usr/share/doc/transtermhp/copyright
    • /usr/share/doc/transtermhp/examples/calibrate.sh
    • /usr/share/doc/transtermhp/examples/make_expterm.py.gz
    • /usr/share/doc/transtermhp/examples/mfold_rna.sh
    • /usr/share/doc/transtermhp/examples/random_fasta.py
    • /usr/share/man/man1/2ndscore.1.gz
    • /usr/share/man/man1/transterm.1.gz
    • /usr/share/transtermhp/expterm.dat

    Changelog

    2013-11-18 - Andreas Tille <tille@debian.org> transtermhp (2.09-2) unstable; urgency=low [ Charles Plessy ] * debian/upstream (renamed from upstream-metadata.yaml [ Andreas Tille ] * debian/upstream: - Fixed typo (s/TITILE/TITLE/) - Moved DOI+PMID to references - Added Volume, Number, Pages - BibTeX conform authors * debian/copyright: - DEP5 - Add Files-Excluded to document what was removed from original source * debian/watch: handle +dfsg suffix * debian/control: - cme fix dpkg-control - debhelper 9 - canonical Vcs fields * debian/patches/hardening.patch: Propagate hardening flags

    2011-10-28 - Andreas Tille <tille@debian.org> transtermhp (2.09-1) unstable; urgency=low [ Alex Mestiashvili ] * New upstream release. [ Andreas Tille ] * Standards-Version: 3.9.2 (no changes needed) * Debhelper 8 (compat+control) * Fixed Vcs fields * Stripped citation from long descriptions because it can be found in debian/upstream-metadata.yaml

    2011-02-19 - Alex Mestiashvili <alex@biotec.tu-dresden.de> transtermhp (2.07-1) unstable; urgency=low * Initial release (Closes: #614382)

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