toppred_1.10-1_i386.deb


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Description

toppred - transmembrane topology prediction

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name toppred
Package version 1.10
Package release 1
Package architecture i386
Package type deb
Installed size 154 B
Download size 57.91 KB
Official Mirror archive.ubuntu.com
Toppred is a program to determine the topology of a transmembrane
protein based on G. von Heijne algorithm.
Each sequence from seq data in fasta format is processed, and toppred
generate the Hydrophobycity profile of the sequence, and the
corresponding hydrophobycities values in the file sequence-ID.hydro.
Furthermore, the predicted topologies are represented as png images.
Each topology is stored in file sequence-ID-number.png
The hydrophobicity profile is computed using a window formed by a core
rectangular window of size n, flanked by 2 triangular windows of size q.
NB rectangular and triangular mean that the ponderation values inside
those windows are respectively constant and variable.
This program is a new implementation of the original toppred program,
based on G. von Heijne algorithm

Alternatives

Package Version Architecture Repository
toppred_1.10-1_amd64.deb 1.10 amd64 Ubuntu Universe
toppred - - -

Requires

Name Value
libc6 >= 2.4
libgd3 >= 2.1.0~alpha~

Download

Type URL
Binary Package toppred_1.10-1_i386.deb
Source Package toppred

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install toppred deb package:
    # sudo apt-get install toppred

Files

Path
/usr/bin/toppred
/usr/share/doc/toppred/README.test
/usr/share/doc/toppred/changelog.Debian.gz
/usr/share/doc/toppred/copyright
/usr/share/doc/toppred/run-unit-test
/usr/share/doc/toppred/examples/data/CYTEXT-scale
/usr/share/doc/toppred/examples/data/GES-scale
/usr/share/doc/toppred/examples/data/GVH-scale
/usr/share/doc/toppred/examples/data/KD-scale
/usr/share/doc/toppred/examples/data/Makefile.am
/usr/share/doc/toppred/examples/data/Makefile.gz
/usr/share/doc/toppred/examples/data/Makefile.in.gz
/usr/share/doc/toppred/examples/data/toppred.dtd
/usr/share/doc/toppred/examples/test/Makefile.am
/usr/share/doc/toppred/examples/test/Makefile.gz
/usr/share/doc/toppred/examples/test/Makefile.in.gz
/usr/share/doc/toppred/examples/test/construct_topos.test
/usr/share/doc/toppred/examples/test/detect_segments.test
/usr/share/doc/toppred/examples/test/first_seg.err
/usr/share/doc/toppred/examples/test/first_seg.fasta
/usr/share/doc/toppred/examples/test/first_seg.out
/usr/share/doc/toppred/examples/test/hydro.test
/usr/share/doc/toppred/examples/test/last_seg.err
/usr/share/doc/toppred/examples/test/last_seg.fasta
/usr/share/doc/toppred/examples/test/last_seg.out
/usr/share/doc/toppred/examples/test/math.test
/usr/share/doc/toppred/examples/test/min_seqlen.err
/usr/share/doc/toppred/examples/test/min_seqlen.fasta
/usr/share/doc/toppred/examples/test/min_seqlen.out
/usr/share/doc/toppred/examples/test/more_calc.err
/usr/share/doc/toppred/examples/test/more_calc.fasta
/usr/share/doc/toppred/examples/test/more_calc.out.gz
/usr/share/doc/toppred/examples/test/naming.test
/usr/share/doc/toppred/examples/test/no_error.err
/usr/share/doc/toppred/examples/test/no_seg.err
/usr/share/doc/toppred/examples/test/no_seg.fasta
/usr/share/doc/toppred/examples/test/no_seg.out
/usr/share/doc/toppred/examples/test/only_put.err
/usr/share/doc/toppred/examples/test/only_put.fasta
/usr/share/doc/toppred/examples/test/only_put.out
/usr/share/doc/toppred/examples/test/seq-test
/usr/share/doc/toppred/examples/test/seq_anonymous.err
/usr/share/doc/toppred/examples/test/seq_anonymous.fasta
/usr/share/doc/toppred/examples/test/seq_zero_div.fasta
/usr/share/doc/toppred/examples/test/seqlen.test
/usr/share/doc/toppred/examples/test/too_many_put.err
/usr/share/doc/toppred/examples/test/too_many_put.fasta
/usr/share/doc/toppred/examples/test/too_many_put.out
/usr/share/doc/toppred/examples/test/toppred.test
/usr/share/man/man1/toppred.1.gz
/usr/share/toppred/CYTEXT-scale
/usr/share/toppred/GES-scale
/usr/share/toppred/GVH-scale
/usr/share/toppred/KD-scale
/usr/share/toppred/toppred.dtd

Changelog

2015-01-31 - Andreas Tille <tille@debian.org>
toppred (1.10-1) unstable; urgency=low
* Initial release (Closes: #776709)

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