tigr-glimmer_3.02-4_i386.deb


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Description

tigr-glimmer - Gene detection in archea and bacteria

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name tigr-glimmer
Package version 3.02
Package release 4
Package architecture i386
Package type deb
Installed size 805 B
Download size 272.57 KB
Official Mirror archive.ubuntu.com
Developed by the TIGR institute this software detects coding sequences in
bacteria and archea.
Glimmer is a system for finding genes in microbial DNA, especially the
genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated
Markov Modeler) uses interpolated Markov models (IMMs) to identify the
coding regions and distinguish them from noncoding DNA.

Alternatives

Package Version Architecture Repository
tigr-glimmer_3.02-4_amd64.deb 3.02 amd64 Ubuntu Universe
tigr-glimmer - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Binary Package tigr-glimmer_3.02-4_i386.deb
Source Package tigr-glimmer

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install tigr-glimmer deb package:
    # sudo apt-get install tigr-glimmer

Files

Path
/usr/bin/tigr-glimmer
/usr/bin/tigr-run-glimmer3
/usr/lib/tigr-glimmer/anomaly
/usr/lib/tigr-glimmer/build-fixed
/usr/lib/tigr-glimmer/build-icm
/usr/lib/tigr-glimmer/entropy-profile
/usr/lib/tigr-glimmer/entropy-score
/usr/lib/tigr-glimmer/extract
/usr/lib/tigr-glimmer/glimmer3
/usr/lib/tigr-glimmer/long-orfs
/usr/lib/tigr-glimmer/multi-extract
/usr/lib/tigr-glimmer/score-fixed
/usr/lib/tigr-glimmer/start-codon-distrib
/usr/lib/tigr-glimmer/test
/usr/lib/tigr-glimmer/uncovered
/usr/lib/tigr-glimmer/window-acgt
/usr/share/doc/tigr-glimmer/README.Debian
/usr/share/doc/tigr-glimmer/changelog.Debian.gz
/usr/share/doc/tigr-glimmer/copyright
/usr/share/doc/tigr-glimmer/notes.pdf.gz
/usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz
/usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme
/usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme
/usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz
/usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz
/usr/share/man/man1/tigr-anomaly.1.gz
/usr/share/man/man1/tigr-build-icm.1.gz
/usr/share/man/man1/tigr-extract.1.gz
/usr/share/man/man1/tigr-glimmer.1.gz
/usr/share/man/man1/tigr-glimmer3.1.gz
/usr/share/man/man1/tigr-long-orfs.1.gz
/usr/share/man/man1/tigr-run-glimmer3.1.gz

Changelog

2015-12-15 - Andreas Tille <tille@debian.org>
tigr-glimmer (3.02-4) unstable; urgency=medium
* moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Fix crashes reported by Mayhem
Closes: #715701, #715702
2013-11-05 - Andreas Tille <tille@debian.org>
tigr-glimmer (3.02-3) unstable; urgency=low
* debian/upstream: publication information
* debian/source/format: 3.0 (quilt)
* debian/control:
- updated homepage URL
- cme fix dpkg-control
- canonical Vcs URLs
- dropped cdbs + quilt from Build-Depends
* debian/README.source: deleted because redundant
* debian/rules: switch from cdbs to dh
* Hardening by droping Makefile patch in favour of providing
options directly inside debian/rules
* debian/copyright: DEP5
* Verified current build log and noticed that -L/usr/lib is not used
Closes: #722845
2010-01-21 - Andreas Tille <tille@debian.org>
tigr-glimmer (3.02-2) unstable; urgency=low
* debian/control:
- Fixed Vcs-Svn (missing svn/)
- Updated Standards-Version to 3.8.1 (no changes needed)
- Standards-Version: 3.8.3 (no changes needed)
- debhelper (>= 7)
* Fixed E-Mail address of upstream author in debian/copyright
* Fix FTBFS on amd64
Closes: #560442
* Added README.source
2008-04-22 - Andreas Tille <tille@debian.org>
tigr-glimmer (3.02-1) unstable; urgency=low
[ Charles Plessy ]
* debian/watch:
- Replaced by the new one written by Nelson (Closes: #385258)
[ Andreas Tille ]
*  New upstream version
* Group maintenance by Debian-Med team
- DM-Upload-Allowed: Yes
- Vcs tags
- Use correct address as Uploader: Steffen Moeller <moeller@debian.org>
* Standards-Version: 3.7.3 (no changes needed)
* debhelper >= 5
* Moved Homepage from long description to control fields
* Removed [Biology] from short description
2008-03-20 - Moritz Muehlenhoff <jmm@debian.org>
tigr-glimmer (2.13-1.1) unstable; urgency=low
* Non-maintainer upload.
* Fix GCC 4.3 compatibility, patch by Kumar Appaiah (Closes: #461691)
2004-11-10 - Steffen Moeller <moeller@pzr.uni-rostock.de>
tigr-glimmer (2.13-1) unstable; urgency=low
* New upstream release - no significant changes for Linux users.
* Resolves conflict for "extract" binary and man page (Closes:Bug#227790,Bug#274780).
2003-10-16 - Steffen Moeller <moeller@pzr.uni-rostock.de>
tigr-glimmer (2.12-1) unstable; urgency=low
* Initial Release (Closes:#219453).
* Added man pages to upstream release

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