tigr-glimmer_3.02-4_i386.deb


Advertisement

Description

tigr-glimmer - Gene detection in archea and bacteria

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: tigr-glimmer
Package version: 3.02
Package release: 4
Package architecture: i386
Package type: deb
Installed size: 805 B
Download size: 272.57 KB
Official Mirror: archive.ubuntu.com
Developed by the TIGR institute this software detects coding sequences in bacteria and archea. Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.

Alternatives

    Download

    Source package: tigr-glimmer

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install tigr-glimmer deb package:
      # sudo apt-get install tigr-glimmer

    Files

    • /usr/bin/tigr-glimmer
    • /usr/bin/tigr-run-glimmer3
    • /usr/lib/tigr-glimmer/anomaly
    • /usr/lib/tigr-glimmer/build-fixed
    • /usr/lib/tigr-glimmer/build-icm
    • /usr/lib/tigr-glimmer/entropy-profile
    • /usr/lib/tigr-glimmer/entropy-score
    • /usr/lib/tigr-glimmer/extract
    • /usr/lib/tigr-glimmer/glimmer3
    • /usr/lib/tigr-glimmer/long-orfs
    • /usr/lib/tigr-glimmer/multi-extract
    • /usr/lib/tigr-glimmer/score-fixed
    • /usr/lib/tigr-glimmer/start-codon-distrib
    • /usr/lib/tigr-glimmer/test
    • /usr/lib/tigr-glimmer/uncovered
    • /usr/lib/tigr-glimmer/window-acgt
    • /usr/share/doc/tigr-glimmer/README.Debian
    • /usr/share/doc/tigr-glimmer/changelog.Debian.gz
    • /usr/share/doc/tigr-glimmer/copyright
    • /usr/share/doc/tigr-glimmer/notes.pdf.gz
    • /usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz
    • /usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme
    • /usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme
    • /usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz
    • /usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz
    • /usr/share/man/man1/tigr-anomaly.1.gz
    • /usr/share/man/man1/tigr-build-icm.1.gz
    • /usr/share/man/man1/tigr-extract.1.gz
    • /usr/share/man/man1/tigr-glimmer.1.gz
    • /usr/share/man/man1/tigr-glimmer3.1.gz
    • /usr/share/man/man1/tigr-long-orfs.1.gz
    • /usr/share/man/man1/tigr-run-glimmer3.1.gz

    Changelog

    2015-12-15 - Andreas Tille <tille@debian.org> tigr-glimmer (3.02-4) unstable; urgency=medium * moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control * Fix crashes reported by Mayhem Closes: #715701, #715702

    2013-11-05 - Andreas Tille <tille@debian.org> tigr-glimmer (3.02-3) unstable; urgency=low * debian/upstream: publication information * debian/source/format: 3.0 (quilt) * debian/control: - updated homepage URL - cme fix dpkg-control - canonical Vcs URLs - dropped cdbs + quilt from Build-Depends * debian/README.source: deleted because redundant * debian/rules: switch from cdbs to dh * Hardening by droping Makefile patch in favour of providing options directly inside debian/rules * debian/copyright: DEP5 * Verified current build log and noticed that -L/usr/lib is not used Closes: #722845

    2010-01-21 - Andreas Tille <tille@debian.org> tigr-glimmer (3.02-2) unstable; urgency=low * debian/control: - Fixed Vcs-Svn (missing svn/) - Updated Standards-Version to 3.8.1 (no changes needed) - Standards-Version: 3.8.3 (no changes needed) - debhelper (>= 7) * Fixed E-Mail address of upstream author in debian/copyright * Fix FTBFS on amd64 Closes: #560442 * Added README.source

    2008-04-22 - Andreas Tille <tille@debian.org> tigr-glimmer (3.02-1) unstable; urgency=low [ Charles Plessy ] * debian/watch: - Replaced by the new one written by Nelson (Closes: #385258) [ Andreas Tille ] * New upstream version * Group maintenance by Debian-Med team - DM-Upload-Allowed: Yes - Vcs tags - Use correct address as Uploader: Steffen Moeller <moeller@debian.org> * Standards-Version: 3.7.3 (no changes needed) * debhelper >= 5 * Moved Homepage from long description to control fields * Removed [Biology] from short description

    2008-03-20 - Moritz Muehlenhoff <jmm@debian.org> tigr-glimmer (2.13-1.1) unstable; urgency=low * Non-maintainer upload. * Fix GCC 4.3 compatibility, patch by Kumar Appaiah (Closes: #461691)

    2004-11-10 - Steffen Moeller <moeller@pzr.uni-rostock.de> tigr-glimmer (2.13-1) unstable; urgency=low * New upstream release - no significant changes for Linux users. * Resolves conflict for "extract" binary and man page (Closes:Bug#227790,Bug#274780).

    2003-10-16 - Steffen Moeller <moeller@pzr.uni-rostock.de> tigr-glimmer (2.12-1) unstable; urgency=low * Initial Release (Closes:#219453). * Added man pages to upstream release

    Advertisement
    Advertisement