theseus-examples_3.3.0-4build1_all.deb


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Description

theseus-examples - superimpose macromolecules using maximum likelihood (examples)

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: theseus-examples
Package version: 3.3.0
Package release: 4build1
Package architecture: all
Package type: deb
Installed size: 20.87 KB
Download size: 19.87 MB
Official Mirror: archive.ubuntu.com
Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments. When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data. This package contains usage examples for theseus.

Alternatives

Replaces

  • theseus <= 3.0.0-1

    Download

    Source package: theseus

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install theseus-examples deb package:
      # sudo apt-get install theseus-examples

    Files

    • /usr/share/doc/theseus-examples/changelog.Debian.gz
    • /usr/share/doc/theseus-examples/copyright
    • /usr/share/doc/theseus-examples/run-unit-test
    • /usr/share/doc/theseus/examples/1adz.pdb.gz
    • /usr/share/doc/theseus/examples/1s40.pdb.gz
    • /usr/share/doc/theseus/examples/2sdf.pdb.gz
    • /usr/share/doc/theseus/examples/README
    • /usr/share/doc/theseus/examples/cytochromes/README
    • /usr/share/doc/theseus/examples/cytochromes/cytc.aln
    • /usr/share/doc/theseus/examples/cytochromes/cytc.filemap
    • /usr/share/doc/theseus/examples/cytochromes/d1cih__.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1crj__.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1csu__.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1csx__.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1kyow_.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1lfma_.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1m60a_.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1u74d_.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d1yeb__.pdb.gz
    • /usr/share/doc/theseus/examples/cytochromes/d2pcbb_.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1a5z_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1b8p_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1bdm_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1bdm_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1bmd_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1bmd_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ceq_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1cet_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1civ_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1emd_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ez4_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ez4_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ez4_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ez4_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1guy_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1guy_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1guz_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1guz_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1guz_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1guz_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1gv0_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1gv0_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1gv1_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1gv1_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1gv1_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1gv1_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hlp_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hlp_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hyg_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hyg_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hyh_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hyh_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hyh_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1hyh_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i0z_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i0z_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_E.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_F.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_G.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1i10_H.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ib6_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ib6_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ib6_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ib6_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1iz9_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1iz9_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldb_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldb_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldb_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldb_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldm_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_E.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_F.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_G.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ldn_H.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1llc_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1lld_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1lld_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1mld_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1mld_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1mld_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1mld_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1o6z_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1o6z_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1o6z_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1o6z_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1oc4_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1oc4_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1pze_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1pzg_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1pzg_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1pzg_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1pzg_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1sev_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1sev_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_E.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_F.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_G.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1smk_H.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1sov_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1sov_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1t24_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1t2e_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1t2f_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1t2f_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1t2f_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1t2f_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1u4o_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ur5_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1ur5_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1uxh_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1uxh_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1uxi_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1uxi_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1v6a_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1v6a_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1wze_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1wze_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1xiv_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/1y6j_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2a92_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2a92_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2a92_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2a92_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2d4a_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2d4a_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2d4a_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2d4a_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2dfd_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2dfd_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2dfd_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2dfd_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_E.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_F.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_G.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2e37_H.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2ewd_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2ewd_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2fm3_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2fm3_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_E.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_F.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_G.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_H.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_I.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/2hjr_K.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hjr_L.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hlp_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2hlp_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2i6t_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2i6t_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2j5k_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/2j5k_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2j5k_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2ldx_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2pwz_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2pwz_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2pwz_E.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2pwz_G.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v65_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v65_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v6b_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v6b_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v6b_C.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v6b_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v6m_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v6m_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2v6m_C.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/2x0i_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/2x0r_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/2xxb_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/2xxe_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/2zqy_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/2zqy_D.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/3czm_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/3czm_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/3d0o_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/3fi9_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/3fi9_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/3gvh_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/3h3f_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/3ldh_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/3nep_X.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/3om9_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/5ldh_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/5ldh_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/5mdh_A.pdb.gz
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    • /usr/share/doc/theseus/examples/ldh/6ldh_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/9ldb_A.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/9ldb_B.pdb.gz
    • /usr/share/doc/theseus/examples/ldh/README
    • /usr/share/doc/theseus/examples/ldh/ldh.a2m.gz
    • /usr/share/doc/theseus/examples/trypsins/1A0J_A.pdb.gz
    • /usr/share/doc/theseus/examples/trypsins/1A0L_A.pdb.gz
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    • /usr/share/doc/theseus/examples/trypsins/1BDA_A.pdb.gz
    • /usr/share/doc/theseus/examples/trypsins/1BML_A.pdb.gz
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    Changelog

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