tandem-mass_2013.09.01-2_i386.deb


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Description

tandem-mass - mass spectrometry software for protein identification

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name tandem-mass
Package version 2013.09.01
Package release 2
Package architecture i386
Package type deb
Installed size 626 B
Download size 202.77 KB
Official Mirror archive.ubuntu.com
X! Tandem can match tandem mass spectra with peptide sequences, in a
process that is commonly used to perform protein identification.
This software has a very simple, unsophisticated application
programming interface (API): it simply takes an XML file of
instructions on its command line, and outputs the results into an XML
file, which has been specified in the input XML file. The output file
format is described at
\fI`http://www.thegpm.org/docs/X_series_output_form.pdf'\fR.
Unlike some earlier generation search engines, all of the X! Series
search engines calculate statistical confidence (expectation values)
for all of the individual spectrum-to-sequence assignments. They also
reassemble all of the peptide assignments in a data set onto the
known protein sequences and assign the statistical confidence that
this assembly and alignment is non-random. The formula for which can
be found here. Therefore, separate assembly and statistical analysis
software, e.g. PeptideProphet and ProteinProphet, do not need to be
used.

Alternatives

Package Version Architecture Repository
tandem-mass_2013.09.01-2_amd64.deb 2013.09.01 amd64 Ubuntu Universe
tandem-mass - - -

Requires

Name Value
libc6 >= 2.7
libexpat1 >= 2.0.1
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.9

Download

Type URL
Binary Package tandem-mass_2013.09.01-2_i386.deb
Source Package tandem-mass

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install tandem-mass deb package:
    # sudo apt-get install tandem-mass

Files

Path
/usr/bin/tandem
/usr/share/doc/tandem-mass/changelog.Debian.gz
/usr/share/doc/tandem-mass/copyright
/usr/share/lintian/overrides/tandem-mass
/usr/share/man/man1/tandem.1.gz

Changelog

2014-08-18 - Filippo Rusconi <lopippo@debian.org>
tandem-mass (1:2013.09.01-2) unstable; urgency=medium
* mv upstream upstream/metadata;
* Bump up StandardsVersion to 3.9.5.
2013-11-22 - The Debichem Group <debichem-devel@lists.alioth.debian.org>
tandem-mass (1:2013.09.01-1) unstable; urgency=low
* Packaging of X!Tandem (SLEDGEHAMMER 2013.09.01, from
http://www.thegpm.org/tandem/) for Debian GNU/Linux
(Olivier Langella <Olivier.Langella@moulon.inra.fr>, with the
great help of Filippo Rusconi <lopippo@debian.org>);
* Upload by Filippo Rusconi <lopippo@debian.org>.
2013-08-29 - The Debichem Group <debichem-devel@lists.alioth.debian.org>
tandem-mass (1:2013.06.15-1) unstable; urgency=low
* quilt dependencies removed from rules. quilt is now used the modern
way as decribed in http://pkg-perl.alioth.debian.org/howto/quilt.html
* Packaging of X!Tandem (JACKHAMMER 2013.06.15, from
http://www.thegpm.org/TANDEM/) for Debian GNU/Linux
(Olivier Langella <Olivier.Langella@moulon.inra.fr>, with the
great help of Filippo Rusconi <lopippo@debian.org>);
* Upload by Filippo Rusconi <lopippo@debian.org>;
2013-06-07 - Filippo Rusconi <lopippo@debian.org>
tandem-mass (1:2013.02.01.1-1) unstable; urgency=low
* Packaging of X!Tandem (CYCLONE 2013.02.01.1, from
http://www.thegpm.org/TANDEM/) for Debian GNU/Linux
(Olivier Langella <olivier.langella@laposte.net>, with the
great help of Filippo Rusconi <lopippo@debian.org>);
* Added and tested debian/watch file (Filippo Rusconi);
* Added debian/upstream file (Olivier Langella);
2013-01-16 - Filippo Rusconi <lopippo@debian.org>
tandem-mass (20121001-2) unstable; urgency=low
* Fix the target build-stamp by adding the $(QUILT_STAMPFN)
dependency. This missing dependency seemingly caused problems in
Ubuntu (as reported by Tim Gardner <tim.gardner@canonical.com>;
Closes: #695553). Thanks Tim.
2012-11-14 - Filippo Rusconi <lopippo@debian.org>
tandem-mass (20121001-1) unstable; urgency=low
* Initial packaging of X!Tandem (CYCLONE 12-10-01-1, from
http://www.thegpm.org/TANDEM/) for Debian GNU/Linux (in collaboration
with Olivier Langella <olivier.langella@laposte.net>). (Closes: #693800).

See Also

Package Description
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tangerine_0.3.4-6ubuntu2_i386.deb music server using DAAP
tanglet-data_1.3.1-2_all.deb single player word finding game based on Boggle - data files
tanglet_1.3.1-2_i386.deb single player word finding game based on Boggle
tango-accesscontrol_8.1.2c+dfsg-7ubuntu3_i386.deb TANGO distributed control system - accesscontrol server
tango-common_8.1.2c+dfsg-7ubuntu3_all.deb TANGO distributed control system - common files
tango-db_8.1.2c+dfsg-7ubuntu3_i386.deb TANGO distributed control system - database server
tango-icon-theme-common_0.7-0ubuntu2_all.deb Tango Icon theme - common icons
tango-icon-theme-extras_0.1.0-0ubuntu5_all.deb Tango Icon theme Extras
tango-icon-theme_0.8.90-5ubuntu1_all.deb Tango icon theme
tango-starter_8.1.2c+dfsg-7ubuntu3_i386.deb TANGO distributed control system - starter server
tango-test_8.1.2c+dfsg-7ubuntu3_i386.deb TANGO distributed control system - test device
tantan_13-2_i386.deb low complexity and tandem repeat masker for biosequences
taopm_1.0-3ubuntu1_i386.deb Sound synthesis software with physical models
tap-plugins-doc_20140526-2_all.deb TAP-plugins documentation
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