tabix_1.2.1-2ubuntu1_i386.deb


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Description

tabix - generic indexer for TAB-delimited genome position files

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name tabix
Package version 1.2.1
Package release 2ubuntu1
Package architecture i386
Package type deb
Installed size 936 B
Download size 223.93 KB
Official Mirror archive.ubuntu.com
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
This version of tabix is built from the HTSlib source.

Alternatives

Package Version Architecture Repository
tabix_1.2.1-2ubuntu1_amd64.deb 1.2.1 amd64 Ubuntu Universe
tabix - - -

Requires

Name Value
libc6 >= 2.15
zlib1g >= 1:1.2.0.2

Download

Type URL
Binary Package tabix_1.2.1-2ubuntu1_i386.deb
Source Package htslib

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install tabix deb package:
    # sudo apt-get install tabix

Files

Path
/usr/bin/bgzip
/usr/bin/tabix
/usr/share/doc/tabix/changelog.Debian.gz
/usr/share/doc/tabix/copyright
/usr/share/lintian/overrides/tabix
/usr/share/man/man1/bgzip.1.gz
/usr/share/man/man1/tabix.1.gz

Changelog

2015-12-15 - Dimitri John Ledkov <xnox@ubuntu.com>
htslib (1.2.1-2ubuntu1) xenial; urgency=high
* Skip test-suites on armhf, powerpc and s390x due to broken endiannes
and alignment issues. See https://github.com/samtools/htslib/issues/98
for details. Hopefully upstream will agree on a concept and merge it
soon.
2015-12-09 - Andreas Tille <tille@debian.org>
htslib (1.2.1-2) unstable; urgency=medium
* Team upload
* Enable build on hurd-i386
Closes: #793512
* More verbose description vor -dev and -test package
* Fix lintian override
* Verified Mayhem bug report which is solved in this version
Closes: #716376
2015-05-25 - Charles Plessy <plessy@debian.org>
htslib (1.2.1-1) unstable; urgency=medium
0662716 Merge tag '1.2.1' into debian/unstable
084f27d Install NEWS as upstream changelog.
316fb96 Override a Lintian false positive.
3363679 Clean test directory.
69bf167 Corrected a typo in tabix description.
2014-09-24 - Charles Plessy <plessy@debian.org>
htslib (1.1-1) unstable; urgency=medium
1357fbd Merge tag '1.1' into debian/unstable
87549cd Updated symbols file.  One symbol is missing.
873ea9b Removed orphan paragraph in machine-readable copyright file.
49de2b9 Allow parallel build.
7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends).
0e5e9e6 Conforms to Policy 3.9.6.
2014-09-16 - Charles Plessy <plessy@debian.org>
htslib (1.0-2) unstable; urgency=medium
Uploaded to unstable (see previous changelog from experimental).
2014-08-17 - Charles Plessy <plessy@debian.org>
htslib (1.0-1) experimental; urgency=low
cc559b8 Merged with upstream's master branch.
74b9d7b Build on the master branch.
04815a7 New major version (libhts0 -> libhts1).
98c18ca Updated symbols file.
22fef0c Install pkgconfig file.
420896b Override PACKAGE_VERSION to avoid tags with a slash in the name.
79b5d4e Use the Debian package version as PACKAGE_VERSION.
72b5c4a Finally use the 3.0 (quilt) format in single-debian-patch mode.
d870946 Adjusted substitution variables following dpkg's warnings.
9469458 Removed debug command accidentally introduced.
8c7f7d4 Replace the old tabix package from the tabix source package.
2013-11-16 - Charles Plessy <plessy@debian.org>
htslib (0.2.0~rc3-1) unstable; urgency=low
* Initial release. (Closes: #729282)

See Also

Package Description
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tablix2_0.3.5-2ubuntu1_i386.deb Kernel for solving general timetabling problems
tacacs+_4.0.4.27a-1_i386.deb TACACS+ authentication daemon
tachyon-bin-nox_0.99~b6+dsx-4_i386.deb Parallel/Multiprocessor Standalone Ray Tracer - with no X support
tachyon-bin-ogl_0.99~b6+dsx-4_i386.deb Parallel/Multiprocessor Standalone Ray Tracer - with OpenGL display
tachyon-doc_0.99~b6+dsx-4_all.deb Parallel/Multiprocessor Ray Tracing System - reference manual
tachyon_0.99~b6+dsx-4_all.deb Parallel/Multiprocessor Standalone Ray Tracer - metapackage
tack_1.07-1_i386.deb terminfo action checker
taffybar_0.4.5-4build2_i386.deb desktop bar extensible in Haskell
tagainijisho-common_1.0.2-1_all.deb Common files for Tagaini Jisho
tagainijisho-dic-de_1.0.2-1_all.deb German dictionary files for Tagaini Jisho
tagainijisho-dic-en_1.0.2-1_all.deb English dictionary files for Tagaini Jisho
tagainijisho-dic-es_1.0.2-1_all.deb Spanish dictionary files for Tagaini Jisho
tagainijisho-dic-fr_1.0.2-1_all.deb French dictionary files for Tagaini Jisho
tagainijisho-dic-it_1.0.2-1_all.deb Italian dictionary files for Tagaini Jisho
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