sumatra_1.0.10-1_i386.deb


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Description

sumatra - fast and exact comparison and clustering of sequences

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: sumatra
Package version: 1.0.10
Package release: 1
Package architecture: i386
Package type: deb
Installed size: 185 B
Download size: 102.10 KB
Official Mirror: archive.ubuntu.com
With the development of next-generation sequencing, efficient tools are needed to handle millions of sequences in reasonable amounts of time. Sumatra is a program developed by the LECA. Sumatra aims to compare sequences in a way that is fast and exact at the same time. This tool has been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes the pairwise alignment scores from one dataset or between two datasets, with the possibility to specify a similarity threshold under which pairs of sequences that have a lower similarity are not reported. The output can then go through a classification process with programs such as MCL or MOTHUR.

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Requires

    Download

    Binary package: sumatra_1.0.10-1_i386.deb
    Source package: sumatra

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install sumatra deb package:
      # sudo apt-get install sumatra

    Files

    • /usr/bin/sumatra
    • /usr/share/doc-base/sumatra
    • /usr/share/doc/sumatra/changelog.Debian.gz
    • /usr/share/doc/sumatra/copyright
    • /usr/share/doc/sumatra/sumatra_user_manual.pdf
    • /usr/share/man/man1/sumatra.1.gz

    Changelog

    2015-08-06 - Andreas Tille <tille@debian.org> sumatra (1.0.10-1) unstable; urgency=medium * Initial upload to Debian (Closes: #794699) * New upstream version

    2015-02-13 - Tim Booth <tbooth@ceh.ac.uk> sumatra (1.0.01-0ubuntu1) trusty; urgency=medium * Initial release for QIIME 1.9

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