sumatra_1.0.10-1_i386.deb


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Description

sumatra - fast and exact comparison and clustering of sequences

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name sumatra
Package version 1.0.10
Package release 1
Package architecture i386
Package type deb
Installed size 185 B
Download size 102.10 KB
Official Mirror archive.ubuntu.com
With the development of next-generation sequencing, efficient tools are
needed to handle millions of sequences in reasonable amounts of time.
Sumatra is a program developed by the LECA. Sumatra aims to compare
sequences in a way that is fast and exact at the same time. This tool
has been developed to be adapted to the type of data generated by DNA
metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes
the pairwise alignment scores from one dataset or between two datasets,
with the possibility to specify a similarity threshold under which pairs
of sequences that have a lower similarity are not reported. The output
can then go through a classification process with programs such as MCL
or MOTHUR.

Alternatives

Package Version Architecture Repository
sumatra_1.0.10-1_amd64.deb 1.0.10 amd64 Ubuntu Universe
sumatra - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Binary Package sumatra_1.0.10-1_i386.deb
Source Package sumatra

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install sumatra deb package:
    # sudo apt-get install sumatra

Files

Path
/usr/bin/sumatra
/usr/share/doc-base/sumatra
/usr/share/doc/sumatra/changelog.Debian.gz
/usr/share/doc/sumatra/copyright
/usr/share/doc/sumatra/sumatra_user_manual.pdf
/usr/share/man/man1/sumatra.1.gz

Changelog

2015-08-06 - Andreas Tille <tille@debian.org>
sumatra (1.0.10-1) unstable; urgency=medium
* Initial upload to Debian (Closes: #794699)
* New upstream version
2015-02-13 - Tim Booth <tbooth@ceh.ac.uk>
sumatra (1.0.01-0ubuntu1) trusty; urgency=medium
* Initial release for QIIME 1.9

See Also

Package Description
summain_0.20-1_i386.deb create file manifests with checksums
sumo-doc_0.25.0+dfsg1-2_all.deb Simulation of Urban MObility (SUMO), documentation and examples
sumo-tools_0.25.0+dfsg1-2_all.deb Simulation of Urban MObility (SUMO), tools and scripts
sumo_0.25.0+dfsg1-2_i386.deb Simulation of Urban MObility (SUMO)
sumtrees_4.0.3+dfsg-1_all.deb Phylogenetic Tree Summarization and Annotation
sunclock-maps_3.57-6_all.deb sunclock vector graphic maps
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sunflow_0.07.2.svn396+dfsg-14_all.deb rendering system for photo-realistic image synthesis (GUI)
sunpinyin-utils_2.0.3+git20140127-4_i386.deb Simplified Chinese Input Method from SUN (utilities)
sunxi-tools_1.3-1_i386.deb tools for working with Allwinner (sunxi) ARM processors
sup-mail_0.22.1-1_all.deb thread-centric mailer with tagging and fast search
sup_20100519-1_i386.deb Software Upgrade Protocol implementation
super_3.30.0-7_i386.deb Execute commands setuid root
supercat_0.5.5-4_i386.deb program that colorizes text for terminals and HTML
supercollider-common_3.6.6~repack-2-2_all.deb common files for SuperCollider
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