sumaclust_1.0.10-1_i386.deb


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Description

sumaclust - fast and exact clustering of genomic sequences

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: sumaclust
Package version: 1.0.10
Package release: 1
Package architecture: i386
Package type: deb
Installed size: 200 B
Download size: 116.78 KB
Official Mirror: archive.ubuntu.com
With the development of next-generation sequencing, efficient tools are needed to handle millions of sequences in reasonable amounts of time. Sumaclust is a program developed by the LECA. Sumaclust aims to cluster sequences in a way that is fast and exact at the same time. This tool has been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers. Sumaclust clusters sequences using the same clustering algorithm as UCLUST and CD- HIT. This algorithm is mainly useful to detect the 'erroneous' sequences created during amplification and sequencing protocols, deriving from 'true' sequences.

Alternatives

    Download

    Source package: sumaclust

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install sumaclust deb package:
      # sudo apt-get install sumaclust

    Files

    • /usr/bin/sumaclust
    • /usr/share/doc-base/sumaclust
    • /usr/share/doc/sumaclust/changelog.Debian.gz
    • /usr/share/doc/sumaclust/copyright
    • /usr/share/doc/sumaclust/sumaclust_user_manual.pdf
    • /usr/share/man/man1/sumaclust.1.gz

    Changelog

    2015-08-11 - Andreas Tille <tille@debian.org> sumaclust (1.0.10-1) unstable; urgency=medium * Initial upload to Debian (Closes: #795176)

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