sumaclust_1.0.10-1_i386.deb


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Description

sumaclust - fast and exact clustering of genomic sequences

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name sumaclust
Package version 1.0.10
Package release 1
Package architecture i386
Package type deb
Installed size 200 B
Download size 116.78 KB
Official Mirror archive.ubuntu.com
With the development of next-generation sequencing, efficient tools are
needed to handle millions of sequences in reasonable amounts of time.
Sumaclust is a program developed by the LECA. Sumaclust aims to cluster
sequences in a way that is fast and exact at the same time. This tool
has been developed to be adapted to the type of data generated by DNA
metabarcoding, i.e. entirely sequenced, short markers. Sumaclust
clusters sequences using the same clustering algorithm as UCLUST and CD-
HIT. This algorithm is mainly useful to detect the 'erroneous' sequences
created during amplification and sequencing protocols, deriving from
'true' sequences.

Alternatives

Package Version Architecture Repository
sumaclust_1.0.10-1_amd64.deb 1.0.10 amd64 Ubuntu Universe
sumaclust - - -

Requires

Name Value
libc6 >= 2.7
libgomp1 >= 4.9

Download

Type URL
Binary Package sumaclust_1.0.10-1_i386.deb
Source Package sumaclust

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install sumaclust deb package:
    # sudo apt-get install sumaclust

Files

Path
/usr/bin/sumaclust
/usr/share/doc-base/sumaclust
/usr/share/doc/sumaclust/changelog.Debian.gz
/usr/share/doc/sumaclust/copyright
/usr/share/doc/sumaclust/sumaclust_user_manual.pdf
/usr/share/man/man1/sumaclust.1.gz

Changelog

2015-08-11 - Andreas Tille <tille@debian.org>
sumaclust (1.0.10-1) unstable; urgency=medium
* Initial upload to Debian (Closes: #795176)

See Also

Package Description
sumatra_1.0.10-1_i386.deb fast and exact comparison and clustering of sequences
summain_0.20-1_i386.deb create file manifests with checksums
sumo-doc_0.25.0+dfsg1-2_all.deb Simulation of Urban MObility (SUMO), documentation and examples
sumo-tools_0.25.0+dfsg1-2_all.deb Simulation of Urban MObility (SUMO), tools and scripts
sumo_0.25.0+dfsg1-2_i386.deb Simulation of Urban MObility (SUMO)
sumtrees_4.0.3+dfsg-1_all.deb Phylogenetic Tree Summarization and Annotation
sunclock-maps_3.57-6_all.deb sunclock vector graphic maps
sunclock_3.57-6_i386.deb fancy clock showing time and geographical data
sunflow_0.07.2.svn396+dfsg-14_all.deb rendering system for photo-realistic image synthesis (GUI)
sunpinyin-utils_2.0.3+git20140127-4_i386.deb Simplified Chinese Input Method from SUN (utilities)
sunxi-tools_1.3-1_i386.deb tools for working with Allwinner (sunxi) ARM processors
sup-mail_0.22.1-1_all.deb thread-centric mailer with tagging and fast search
sup_20100519-1_i386.deb Software Upgrade Protocol implementation
super_3.30.0-7_i386.deb Execute commands setuid root
supercat_0.5.5-4_i386.deb program that colorizes text for terminals and HTML
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