stacks-web_1.35-1ubuntu1_all.deb


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Description

stacks-web - web interface for displaying loci from short-read sequences

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name stacks-web
Package version 1.35
Package release 1ubuntu1
Package architecture all
Package type deb
Installed size 332 B
Download size 53.54 KB
Official Mirror archive.ubuntu.com
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
This package provides the web-based viewer which you can use to examine Stacks
output that has been loaded into a MySQL database.

Alternatives

Package Version Architecture Repository
stacks-web_1.35-1ubuntu1_all.deb 1.35 all Ubuntu Universe
stacks-web - - -

Requires

Name Value
apache2 -
httpd -
libapache2-mod-php -
libdbd-mysql-perl -
mysql-server -
php-cgi -
php-mdb2-driver-mysql -

Download

Type URL
Binary Package stacks-web_1.35-1ubuntu1_all.deb
Source Package stacks

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install stacks-web deb package:
    # sudo apt-get install stacks-web

Files

Path
/etc/apache2/conf-available/stacks-web.conf
/etc/stacks/constants.php
/usr/sbin/stacks-setup-database
/usr/share/doc/stacks-web/changelog.Debian.gz
/usr/share/doc/stacks-web/copyright
/usr/share/stacks/php/CatalogClass.php
/usr/share/stacks/php/Locus.php
/usr/share/stacks/php/ajax.js
/usr/share/stacks/php/annotate.js
/usr/share/stacks/php/annotate_marker.php
/usr/share/stacks/php/catalog.php
/usr/share/stacks/php/catalog_genotypes.php
/usr/share/stacks/php/constants.php
/usr/share/stacks/php/constants.php.dist
/usr/share/stacks/php/correct_genotype.php
/usr/share/stacks/php/correct_genotypes.php
/usr/share/stacks/php/db_functions.php
/usr/share/stacks/php/export
/usr/share/stacks/php/export.js
/usr/share/stacks/php/export_batch.php
/usr/share/stacks/php/fst_view.php
/usr/share/stacks/php/hapstat_view.php
/usr/share/stacks/php/header.php
/usr/share/stacks/php/index.php
/usr/share/stacks/php/last_modified.php
/usr/share/stacks/php/phist_view.php
/usr/share/stacks/php/pop_view.php
/usr/share/stacks/php/population_view.js
/usr/share/stacks/php/samples.php
/usr/share/stacks/php/sequence_blast.php
/usr/share/stacks/php/stack_view.php
/usr/share/stacks/php/stacks.css
/usr/share/stacks/php/stacks.js
/usr/share/stacks/php/stacks_functions.php
/usr/share/stacks/php/sumstat_view.php
/usr/share/stacks/php/tags.php
/usr/share/stacks/php/version.php
/usr/share/stacks/php/view_sequence.php
/usr/share/stacks/php/images/caret-d.png
/usr/share/stacks/php/images/caret-u.png
/usr/share/stacks/php/images/excel_icon.png
/usr/share/stacks/php/images/l-arrow-disabled.png
/usr/share/stacks/php/images/l-arrow.png
/usr/share/stacks/php/images/r-arrow-disabled.png
/usr/share/stacks/php/images/r-arrow.png
/usr/share/stacks/php/images/stacks_bg.png
/usr/share/stacks/php/images/stacks_logo_rev_small.png
/usr/share/stacks/sql/catalog_index.sql
/usr/share/stacks/sql/chr_index.sql
/usr/share/stacks/sql/mysql.cnf.dist
/usr/share/stacks/sql/stacks.sql
/usr/share/stacks/sql/tag_index.sql

Changelog

See stacks_1.35-1ubuntu1_i386.deb changelog.

See Also

Package Description
stacks_1.35-1ubuntu1_i386.deb pipeline for building loci from short-read DNA sequences
staden-common_2.0.0+b10-4ubuntu1_all.deb Architecture independent files for Staden
staden-io-lib-examples_1.14.6-2_all.deb programs for maniuplating DNA sequencing files (usage examples)
staden-io-lib-utils_1.14.6-2_i386.deb programs for maniuplating DNA sequencing files
staden_2.0.0+b10-4ubuntu1_i386.deb DNA sequence assembly (Gap4/Gap5), editing and analysis tools
stalin_0.11-6_i386.deb An extremely aggressive Scheme compiler
stalonetray_0.8.1-1_i386.deb Standalone freedesktop.org and KDE systray implementation
stardata-common_0.8_i386.deb Common framework to manage astronomy packages
stardict-common_3.0.1-9.2ubuntu3_all.deb International dictionary - data files
stardict-czech_20140101-3_all.deb Stardict package for Czech dictionary of foreign words
stardict-gnome_3.0.1-9.2ubuntu3_i386.deb International dictionary for GNOME 2
stardict-gtk_3.0.1-9.2ubuntu3_i386.deb International dictionary written in GTK+ 2.x
stardict-plugin-espeak_3.0.1-9.2ubuntu3_i386.deb International dictionary - eSpeak TTS plugin
stardict-plugin-festival_3.0.1-9.2ubuntu3_i386.deb International dictionary - Festival TTS plugin
stardict-plugin-spell_3.0.1-9.2ubuntu3_i386.deb International dictionary - spell plugin
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