stacks-web_1.35-1ubuntu1_all.deb


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Description

stacks-web - web interface for displaying loci from short-read sequences

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: stacks-web
Package version: 1.35
Package release: 1ubuntu1
Package architecture: all
Package type: deb
Installed size: 332 B
Download size: 53.54 KB
Official Mirror: archive.ubuntu.com
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. This package provides the web-based viewer which you can use to examine Stacks output that has been loaded into a MySQL database.

Alternatives

    Download

    Source package: stacks

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install stacks-web deb package:
      # sudo apt-get install stacks-web

    Files

    • /etc/apache2/conf-available/stacks-web.conf
    • /etc/stacks/constants.php
    • /usr/sbin/stacks-setup-database
    • /usr/share/doc/stacks-web/changelog.Debian.gz
    • /usr/share/doc/stacks-web/copyright
    • /usr/share/stacks/php/CatalogClass.php
    • /usr/share/stacks/php/Locus.php
    • /usr/share/stacks/php/ajax.js
    • /usr/share/stacks/php/annotate.js
    • /usr/share/stacks/php/annotate_marker.php
    • /usr/share/stacks/php/catalog.php
    • /usr/share/stacks/php/catalog_genotypes.php
    • /usr/share/stacks/php/constants.php
    • /usr/share/stacks/php/constants.php.dist
    • /usr/share/stacks/php/correct_genotype.php
    • /usr/share/stacks/php/correct_genotypes.php
    • /usr/share/stacks/php/db_functions.php
    • /usr/share/stacks/php/export
    • /usr/share/stacks/php/export.js
    • /usr/share/stacks/php/export_batch.php
    • /usr/share/stacks/php/fst_view.php
    • /usr/share/stacks/php/hapstat_view.php
    • /usr/share/stacks/php/header.php
    • /usr/share/stacks/php/index.php
    • /usr/share/stacks/php/last_modified.php
    • /usr/share/stacks/php/phist_view.php
    • /usr/share/stacks/php/pop_view.php
    • /usr/share/stacks/php/population_view.js
    • /usr/share/stacks/php/samples.php
    • /usr/share/stacks/php/sequence_blast.php
    • /usr/share/stacks/php/stack_view.php
    • /usr/share/stacks/php/stacks.css
    • /usr/share/stacks/php/stacks.js
    • /usr/share/stacks/php/stacks_functions.php
    • /usr/share/stacks/php/sumstat_view.php
    • /usr/share/stacks/php/tags.php
    • /usr/share/stacks/php/version.php
    • /usr/share/stacks/php/view_sequence.php
    • /usr/share/stacks/php/images/caret-d.png
    • /usr/share/stacks/php/images/caret-u.png
    • /usr/share/stacks/php/images/excel_icon.png
    • /usr/share/stacks/php/images/l-arrow-disabled.png
    • /usr/share/stacks/php/images/l-arrow.png
    • /usr/share/stacks/php/images/r-arrow-disabled.png
    • /usr/share/stacks/php/images/r-arrow.png
    • /usr/share/stacks/php/images/stacks_bg.png
    • /usr/share/stacks/php/images/stacks_logo_rev_small.png
    • /usr/share/stacks/sql/catalog_index.sql
    • /usr/share/stacks/sql/chr_index.sql
    • /usr/share/stacks/sql/mysql.cnf.dist
    • /usr/share/stacks/sql/stacks.sql
    • /usr/share/stacks/sql/tag_index.sql

    Changelog

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