squizz - Converter for genetic sequences and alignments

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: squizz
Package version: 0.99b+dfsg
Package release: 3
Package architecture: i386
Package type: deb
Installed size: 69 B
Download size: 17.82 KB
Official Mirror: archive.ubuntu.com
Squizz is a sequence/alignment format checker, but it has some conversion capabilities too. Most common sequence and alignment formats are supported : - EMBL, FASTA, GCG, GDE, GENBANK, IG, NBRF, PIR (codata), RAW, and SWISSPROT. - CLUSTAL, FASTA, MEGA, MSF, NEXUS, PHYLIP (interleaved and sequential) and STOCKHOLM.



    Source package: squizz

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install squizz deb package:
      # sudo apt-get install squizz


    • /usr/bin/squizz
    • /usr/share/doc/squizz/NEWS.gz
    • /usr/share/doc/squizz/README
    • /usr/share/doc/squizz/TODO
    • /usr/share/doc/squizz/changelog.Debian.gz
    • /usr/share/doc/squizz/copyright
    • /usr/share/man/man1/squizz.1.gz
    • /usr/share/man/man5/alifmt.5.gz
    • /usr/share/man/man5/seqfmt.5.gz


    2013-07-06 - Olivier Sallou <osallou@debian.org> squizz (0.99b+dfsg-3) unstable; urgency=low * Add auto-reconf build for ppc64el arch (Closes: #734828). Thanks to Logan Rosen <logan@ubuntu.com>

    2013-07-06 - Olivier Sallou <osallou@debian.org> squizz (0.99b+dfsg-2) unstable; urgency=low * Fix squizz dependency (Closes: #715120)

    2013-02-18 - Olivier Sallou <osallou@debian.org> squizz (0.99b+dfsg-1) unstable; urgency=low * New upstream release [ Anreas Tille ] * debian/copyright: - DEP5 - Add Files-Excluded to document what was removed from original source * debian/watch: handle +dfsg suffix

    2012-01-05 - Andreas Tille <tille@debian.org> squizz (0.99a-2) unstable; urgency=low [ Charles Plessy ] * Split debian/patches/debianpackaging into: debian/patches/correct-manpages-section.patch and debian/patches/disable-swissprot-test.patch for better readability. * Make the repacked upstream archive directory end in “.orig” (debian/get-orig-sources, see Developers Reference 3.4.4 § [ Andreas Tille ] * Section: libs (according to the decision of ftpmaster in override) * Standards-Version: 3.9.2 (no changes needed) * Debhelper 8 (control+compat) * Fixed Vcs fields * Enhanced short description Closes: #625929

    2011-03-18 - Olivier Sallou <olivier.sallou@irisa.fr> squizz (0.99a-1) unstable; urgency=low * Initial release (Closes: #618689)