sortmerna_2.0-1_i386.deb


Advertisement

Description

sortmerna - tool for filtering, mapping and OTU-picking NGS reads

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name sortmerna
Package version 2.0
Package release 1
Package architecture i386
Package type deb
Installed size 980 B
Download size 506.29 KB
Official Mirror archive.ubuntu.com
SortMeRNA is a biological sequence analysis tool for filtering, mapping and
OTU-picking NGS reads. The core algorithm is based on approximate seeds and
allows for fast and sensitive analyses of nucleotide sequences. The main
application of SortMeRNA is filtering rRNA from metatranscriptomic data.
Additional applications include OTU-picking and taxonomy assignation available
through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1).
SortMeRNA takes as input a file of reads (fasta or fastq format) and one or
multiple rRNA database file(s), and sorts apart rRNA and rejected reads into
two files specified by the user. Optionally, it can provide high quality local
alignments of rRNA reads against the rRNA database. SortMeRNA works with
Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and
BLAST-like alignments.

Alternatives

Package Version Architecture Repository
sortmerna_2.0-1_amd64.deb 2.0 amd64 Ubuntu Universe
sortmerna - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.1.1
libgomp1 >= 4.9
libstdc++6 >= 5.2

Download

Type URL
Binary Package sortmerna_2.0-1_i386.deb
Source Package sortmerna

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install sortmerna deb package:
    # sudo apt-get install sortmerna

Files

Path
/usr/bin/indexdb_rna
/usr/bin/sortmerna
/usr/share/doc-base/sortmerna
/usr/share/doc/sortmerna/SortMeRNA-User-Manual-2.0.pdf
/usr/share/doc/sortmerna/changelog.Debian.gz
/usr/share/doc/sortmerna/copyright
/usr/share/lintian/overrides/sortmerna
/usr/share/man/man1/indexdb_rna.1.gz
/usr/share/man/man1/sortmerna.1.gz
/usr/share/sortmerna/rRNA_databases/README.txt
/usr/share/sortmerna/rRNA_databases/scripts/edit_U_to_T_rna.py
/usr/share/sortmerna/rRNA_databases/scripts/fetch_rrna_data.sh
/usr/share/sortmerna/rRNA_databases/scripts/generate_databases.sh
/usr/share/sortmerna/rRNA_databases/scripts/hmmer_clean.sh
/usr/share/sortmerna/scripts/merge-paired-reads.sh
/usr/share/sortmerna/scripts/unmerge-paired-reads.sh

Changelog

2015-08-04 - Andreas Tille <tille@debian.org>
sortmerna (2.0-1) unstable; urgency=medium
* Initial upload to Debian (Closes: #794607)
2015-02-13 - Tim Booth <tbooth@ceh.ac.uk>
sortmerna (2.0-0biolinux1) trusty; urgency=medium
* Initial release.
* Lose memcheck.h from the build to simplify licensing.

See Also

Package Description
sortsmill-tools_0.4-2_all.deb tools for designers of digital fonts
sorune_0.5-1ubuntu1_all.deb tool to manage the database on the Neuros Audio player
sosi2osm_1.0.0-2_i386.deb SOSI to OSM converter
sound-icons_0.1-4_all.deb Sounds for speech enabled applications
sound-juicer_3.18.1-1_i386.deb GNOME CD Ripper
soundconverter_3.0.0~alpha1+git20151209-1_all.deb GNOME application to convert audio files into other formats
soundgrain_4.1.1-2.1_all.deb Graphical interface to control granular sound synthesis modules
soundkonverter_2.1.2-1build1_i386.deb audio converter frontend for KDE
soundmodem_0.20-3_i386.deb Sound Card Amateur Packet Radio Modems
soundscaperenderer-common_0.4.2~dfsg-5_all.deb tool for real-time spatial audio reproduction (common-files)
soundscaperenderer-nox_0.4.2~dfsg-5_i386.deb tool for real-time spatial audio reproduction (without X support)
soundscaperenderer_0.4.2~dfsg-5_i386.deb tool for real-time spatial audio reproduction
soundstretch_1.9.2-2_i386.deb Stretches and pitch-shifts sound independently
source-highlight-ide_1.0-0ubuntu6_i386.deb Qt4 IDE for GNU Source-highlight
source-highlight_3.1.8-1.1_i386.deb convert source code to syntax highlighted document
Advertisement
Advertisement