snpomatic_0.0.20151015-1_i386.deb


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Description

snpomatic - fast, stringent short-read mapping software

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name snpomatic
Package version 0.0.20151015
Package release 1
Package architecture i386
Package type deb
Installed size 196 B
Download size 79.35 KB
Official Mirror archive.ubuntu.com
High throughput sequencing technologies generate large amounts of short reads.
Mapping these to a reference sequence consumes large amounts of processing
time and memory, and read mapping errors can lead to noisy or incorrect
alignments.
SNP-o-matic is a fast, stringent short-read mapping software. It supports a
multitude of output types and formats, for uses in filtering reads, alignments,
sequence-based genotyping calls, assisted reassembly of contigs etc.

Alternatives

Package Version Architecture Repository
snpomatic_0.0.20151015-1_amd64.deb 0.0.20151015 amd64 Ubuntu Universe
snpomatic - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Binary Package snpomatic_0.0.20151015-1_i386.deb
Source Package snpomatic

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install snpomatic deb package:
    # sudo apt-get install snpomatic

Files

Path
/usr/bin/findknownsnps
/usr/share/doc-base/snpomatic
/usr/share/doc-base/snpomatic-doc
/usr/share/doc/snpomatic/Manual.txt.gz
/usr/share/doc/snpomatic/changelog.Debian.gz
/usr/share/doc/snpomatic/copyright
/usr/share/man/man1/findknownsnps.1.gz

Changelog

2015-12-12 - Sascha Steinbiss <sascha@steinbiss.name>
snpomatic (0.0.20151015-1) unstable; urgency=medium
* Initial release. (Closes: #807779)

See Also

Package Description
sntop_1.4.3-4build1_i386.deb A curses-based utility that polls hosts to determine connectivity
so-synth-lv2_1.4-2_i386.deb Set of synthesizers for the LV2 plugin format
socat_1.7.3.1-1_i386.deb multipurpose relay for bidirectional data transfer
socket_1.1-10_i386.deb Multi purpose socket tool
socklog-run_2.1.0-8_all.deb system and kernel logging services
socklog_2.1.0-8_i386.deb system and kernel logging services (programs)
socks4-clients_4.3.beta2-19build1_i386.deb Socks4 enabled clients as rtelnet and rftp
socks4-server_4.3.beta2-19build1_i386.deb SOCKS4 server for proxying IP-based services over a firewall
sockstat_0.3-1.1_i386.deb view detailed information about open connections
socnetv_1.9-1.1_i386.deb Social Network Analysis and Visualisation application
sofa-apps_1.0~beta4-10ubuntu2_i386.deb GUI for the Simulation Open Framework Architecture (SOFA)
sofa-data_1.0~beta4-10ubuntu2_all.deb Simulation Open Framework Architecture - data
sofa-tutorials_1.0~beta4-10ubuntu2_all.deb Simulation Open Framework Architecture - tutorials
sofia-sip-bin_1.12.11+20110422.1-2ubuntu1_i386.deb Sofia-SIP library utilities
sofia-sip-doc_1.12.11+20110422.1-2ubuntu1_all.deb Sofia-SIP library documentation
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