snp-sites_2.1.3-2_i386.deb


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Description

snp-sites - Binary code for the package snp-sites

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name snp-sites
Package version 2.1.3
Package release 2
Package architecture i386
Package type deb
Installed size 24 B
Download size 6.80 KB
Official Mirror archive.ubuntu.com
This program finds single nucleotide polymorphism (SNP) sites from
multi-fasta alignment input files (which might be compressed).   Its
output can be in various widely used formats (Multi Fasta Alignment,
Vcf, phylip).
The software has been developed at the Wellcome Trust Sanger Institute.
A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips)
is a DNA sequence variation occurring when a Single Nucleotide — A, T, C
or G — in the genome (or other shared sequence) differs between members
of a biological species or paired chromosomes.  For example, two
sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA,
contain a difference in a single nucleotide.  In this case there are two
alleles.  Almost all common SNPs have only two alleles.

Alternatives

Package Version Architecture Repository
snp-sites_2.1.3-2_amd64.deb 2.1.3 amd64 Ubuntu Universe
snp-sites - - -

Requires

Name Value
libc6 >= 2.4
libsnp-sites1 -

Download

Type URL
Binary Package snp-sites_2.1.3-2_i386.deb
Source Package snp-sites

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install snp-sites deb package:
    # sudo apt-get install snp-sites

Files

Path
/usr/bin/snp-sites
/usr/share/doc/snp-sites/README.Debian
/usr/share/doc/snp-sites/README.md
/usr/share/doc/snp-sites/changelog.Debian.gz
/usr/share/doc/snp-sites/copyright
/usr/share/man/man1/snp-sites.1.gz

Changelog

2016-01-30 - Sascha Steinbiss <sascha@steinbiss.name>
snp-sites (2.1.3-2) unstable; urgency=medium
* Add copyright entry for new script. 
2016-01-30 - Sascha Steinbiss <sascha@steinbiss.name>
snp-sites (2.1.3-1) unstable; urgency=medium
* New upstream release.
* Use secure Vcs-Git link
2015-12-15 - Sascha Steinbiss <sascha@steinbiss.name>
snp-sites (2.1.1-1) unstable; urgency=medium
* New upstream release
2015-12-04 - Sascha Steinbiss <sascha@steinbiss.name>
snp-sites (2.1.0-2) unstable; urgency=medium
* Allow building on kfreebsd archs
2015-12-03 - Sascha Steinbiss <sascha@steinbiss.name>
snp-sites (2.1.0-1) unstable; urgency=medium
* New upstream release
* Add simple autopkgtest 
2015-11-29 - Sascha Steinbiss <sascha@steinbiss.name>
snp-sites (2.0.2-2) unstable; urgency=medium
* Make build reproducible
Closes: #806568
Thanks to Reiner Herrmann for the patch
* Cosmetics in man page
2015-09-16 - Andreas Tille <tille@debian.org>
snp-sites (2.0.2-1) unstable; urgency=medium
* New upstream version
* Add missing lib subunit
Closes: #799164
2015-07-27 - Andreas Tille <tille@debian.org>
snp-sites (2.0.1-1) unstable; urgency=medium
* New upstream version
2014-02-01 - Jorge Soares <j.s.soares@gmail.com>
snp-sites (1.5.0-1) unstable; urgency=low
* New upstream version
Closes: #735596
2014-01-10 - Jorge Soares <j.s.soares@gmail.com>
snp-sites (1.3-1) unstable; urgency=low
* Initial release (Closes: #735180)

See Also

Package Description
snpomatic_0.0.20151015-1_i386.deb fast, stringent short-read mapping software
sntop_1.4.3-4build1_i386.deb A curses-based utility that polls hosts to determine connectivity
so-synth-lv2_1.4-2_i386.deb Set of synthesizers for the LV2 plugin format
socat_1.7.3.1-1_i386.deb multipurpose relay for bidirectional data transfer
socket_1.1-10_i386.deb Multi purpose socket tool
socklog-run_2.1.0-8_all.deb system and kernel logging services
socklog_2.1.0-8_i386.deb system and kernel logging services (programs)
socks4-clients_4.3.beta2-19build1_i386.deb Socks4 enabled clients as rtelnet and rftp
socks4-server_4.3.beta2-19build1_i386.deb SOCKS4 server for proxying IP-based services over a firewall
sockstat_0.3-1.1_i386.deb view detailed information about open connections
socnetv_1.9-1.1_i386.deb Social Network Analysis and Visualisation application
sofa-apps_1.0~beta4-10ubuntu2_i386.deb GUI for the Simulation Open Framework Architecture (SOFA)
sofa-data_1.0~beta4-10ubuntu2_all.deb Simulation Open Framework Architecture - data
sofa-tutorials_1.0~beta4-10ubuntu2_all.deb Simulation Open Framework Architecture - tutorials
sofia-sip-bin_1.12.11+20110422.1-2ubuntu1_i386.deb Sofia-SIP library utilities
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