snp-sites_2.1.3-2_i386.deb


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Description

snp-sites - Binary code for the package snp-sites

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: snp-sites
Package version: 2.1.3
Package release: 2
Package architecture: i386
Package type: deb
Installed size: 24 B
Download size: 6.80 KB
Official Mirror: archive.ubuntu.com
This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). The software has been developed at the Wellcome Trust Sanger Institute. A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles.

Alternatives

    Download

    Source package: snp-sites

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install snp-sites deb package:
      # sudo apt-get install snp-sites

    Files

    • /usr/bin/snp-sites
    • /usr/share/doc/snp-sites/README.Debian
    • /usr/share/doc/snp-sites/README.md
    • /usr/share/doc/snp-sites/changelog.Debian.gz
    • /usr/share/doc/snp-sites/copyright
    • /usr/share/man/man1/snp-sites.1.gz

    Changelog

    2016-01-30 - Sascha Steinbiss <sascha@steinbiss.name> snp-sites (2.1.3-2) unstable; urgency=medium * Add copyright entry for new script.

    2016-01-30 - Sascha Steinbiss <sascha@steinbiss.name> snp-sites (2.1.3-1) unstable; urgency=medium * New upstream release. * Use secure Vcs-Git link

    2015-12-15 - Sascha Steinbiss <sascha@steinbiss.name> snp-sites (2.1.1-1) unstable; urgency=medium * New upstream release

    2015-12-04 - Sascha Steinbiss <sascha@steinbiss.name> snp-sites (2.1.0-2) unstable; urgency=medium * Allow building on kfreebsd archs

    2015-12-03 - Sascha Steinbiss <sascha@steinbiss.name> snp-sites (2.1.0-1) unstable; urgency=medium * New upstream release * Add simple autopkgtest

    2015-11-29 - Sascha Steinbiss <sascha@steinbiss.name> snp-sites (2.0.2-2) unstable; urgency=medium * Make build reproducible Closes: #806568 Thanks to Reiner Herrmann for the patch * Cosmetics in man page

    2015-09-16 - Andreas Tille <tille@debian.org> snp-sites (2.0.2-1) unstable; urgency=medium * New upstream version * Add missing lib subunit Closes: #799164

    2015-07-27 - Andreas Tille <tille@debian.org> snp-sites (2.0.1-1) unstable; urgency=medium * New upstream version

    2014-02-01 - Jorge Soares <j.s.soares@gmail.com> snp-sites (1.5.0-1) unstable; urgency=low * New upstream version Closes: #735596

    2014-01-10 - Jorge Soares <j.s.soares@gmail.com> snp-sites (1.3-1) unstable; urgency=low * Initial release (Closes: #735180)

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