snap_2013-11-29-1ubuntu2_i386.deb


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Description

snap - location of genes from DNA sequence with hidden markov model

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name snap
Package version 2013
Package release 11-29-1ubuntu2
Package architecture i386
Package type deb
Installed size 2.62 KB
Download size 366.40 KB
Official Mirror archive.ubuntu.com
SNAP is a general purpose gene finding program suitable for both eukaryotic
and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
Parser.

Alternatives

Package Version Architecture Repository
snap_2013-11-29-1ubuntu2.16.04.1_i386.deb 2013 i386 Ubuntu Updates Universe
snap_2013-11-29-1ubuntu2.16.04.1_amd64.deb 2013 amd64 Ubuntu Updates Universe
snap_2013-11-29-1ubuntu2_amd64.deb 2013 amd64 Ubuntu Universe
snap - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Binary Package snap_2013-11-29-1ubuntu2_i386.deb
Source Package snap

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install snap deb package:
    # sudo apt-get install snap

Files

Path
/usr/bin/exonpairs
/usr/bin/fathom
/usr/bin/forge
/usr/bin/hmm-assembler.pl
/usr/bin/hmm-info
/usr/bin/patch-hmm.pl
/usr/bin/snap-dna
/usr/bin/zff2gff3.pl
/usr/bin/zoe-loop
/usr/lib/snap/snap
/usr/share/doc/snap/00README.gz
/usr/share/doc/snap/README.Debian
/usr/share/doc/snap/README.test
/usr/share/doc/snap/changelog.Debian.gz
/usr/share/doc/snap/copyright
/usr/share/doc/snap/run-unit-test
/usr/share/doc/snap/examples/DNA/thale.dna.gz
/usr/share/doc/snap/examples/DNA/worm.dna.gz
/usr/share/man/man1/exonpairs.1.gz
/usr/share/man/man1/fathom.1.gz
/usr/share/man/man1/forge.1.gz
/usr/share/man/man1/hmm-assembler.pl.1.gz
/usr/share/man/man1/hmm-info.1.gz
/usr/share/man/man1/patch-hmm.pl.1.gz
/usr/share/man/man1/snap.1.gz
/usr/share/man/man1/zff2gff3.pl.1.gz
/usr/share/man/man1/zoe-loop.1.gz
/usr/share/snap/HMM/A.gambiae.hmm
/usr/share/snap/HMM/A.mellifera.hmm
/usr/share/snap/HMM/A.thaliana.hmm
/usr/share/snap/HMM/Acanium.hmm
/usr/share/snap/HMM/At.hmm
/usr/share/snap/HMM/B.malayi.hmm
/usr/share/snap/HMM/B.mori.hmm
/usr/share/snap/HMM/C.elegans.hmm
/usr/share/snap/HMM/C.intestinalis.hmm
/usr/share/snap/HMM/Ce.hmm
/usr/share/snap/HMM/D.melanogaster.hmm
/usr/share/snap/HMM/Dm.hmm
/usr/share/snap/HMM/Nasonia.hmm
/usr/share/snap/HMM/O.sativa.hmm
/usr/share/snap/HMM/Os.hmm
/usr/share/snap/HMM/README
/usr/share/snap/HMM/brugia
/usr/share/snap/HMM/ciona
/usr/share/snap/HMM/fly
/usr/share/snap/HMM/ixodesA.hmm
/usr/share/snap/HMM/ixodesB.hmm
/usr/share/snap/HMM/mam39-ro.hmm
/usr/share/snap/HMM/mam39.hmm
/usr/share/snap/HMM/mam46-ro.hmm
/usr/share/snap/HMM/mam46.hmm
/usr/share/snap/HMM/mam54-ro.hmm
/usr/share/snap/HMM/mam54.hmm
/usr/share/snap/HMM/mamiso.hmm
/usr/share/snap/HMM/minimal.hmm
/usr/share/snap/HMM/mosquito
/usr/share/snap/HMM/nGASP.hmm
/usr/share/snap/HMM/nGASPr.hmm
/usr/share/snap/HMM/rice
/usr/share/snap/HMM/thale
/usr/share/snap/HMM/worm
/usr/share/snap/HMM/worm1.hmm
/usr/share/snap/Zoe/blosum62

Changelog

2016-03-14 - Michael Vogt <michael.vogt@ubuntu.com>
snap (2013-11-29-1ubuntu2) xenial; urgency=medium
* fix ADT tests
2016-03-11 - Michael Vogt <michael.vogt@ubuntu.com>
snap (2013-11-29-1ubuntu1) xenial; urgency=medium
* rename /usr/bin/snap to /usr/bin/snap-dna to avoid
command clash with the ubuntu-snappy package
2014-10-07 - Andreas Tille <tille@debian.org>
snap (2013-11-29-1) unstable; urgency=medium
* New upstream version
Closes: #753849
* adapted watch file
* moved debian/upstream to debian/upstrem/metadata
* d/copyright: Exclude binary files without source (from OSX)
* cme fix dpkg-control
* add autopkgtest
2013-10-25 - Andreas Tille <tille@debian.org>
snap (2010-07-28-2) unstable; urgency=low
* debian/upstream: Added citation information
* debian/copyright: DEP5 issues
* debian/README.Debian:
- Removed information which is not intended for users
- Added information about scripts which are not included into the
package since some requriements are not yet fullfilled
* debian/control:
- cme fix dpkg-control
- canonical Vcs fields
* debhelper 9 (control+compat)
* debian/patches/unused-but-set-variable.patch: Make sure package
builds with hardening flags
* debian/rules:
- deleted useless comment
- Work around self-made build system and save original files
before configuration and restore these in clean target
* debian/mans: create simple man pages by polishing help2man output
* debian/bin/snap: wrapper to set environment variable ZOE to implement
hint given in 00README installation instructions
* debian/patches/hardening.patch: Propagate hardening options
2011-06-17 - Steffen Moeller <moeller@debian.org>
snap (2010-07-28-1~lucid1) lucid; urgency=low
* Building for Debian PPA
2011-06-17 - Steffen Moeller <moeller@debian.org>
snap (2010-07-28-1) experimental; urgency=low
* Crude initial release, lacking man pages (Closes: #630753).

See Also

Package Description
snapcraft-examples_2.8.4_all.deb examples for snapcraft
snapcraft_2.8.4_all.deb easily craft snaps
snappea-dev_3.0d3-23ubuntu1_i386.deb development files for SnapPea hyperbolic 3-manifold tool
snappea_3.0d3-23ubuntu1_i386.deb program for creating and studying hyperbolic 3-manifolds
snapper_0.2.4-1ubuntu1_i386.deb Linux filesystem snapshot management tool
snappy_0.3.7-1.1_i386.deb Powerful media player with a minimalistic interface
snarf_7.0-6_i386.deb command-line URL grabber
snd-doc_16.1-5_all.deb Sound file editor (documentation)
snd-gtk-jack_16.1-5_i386.deb Sound file editor (GTK+ user interface - JACK)
snd-gtk-pulse_16.1-5_i386.deb Sound file editor (GTK+ user interface - PulseAudio)
snd-nox_16.1-5_i386.deb Sound file editor (cmdline)
snd_16.1-5_all.deb Sound file editor
sndfile-programs_1.0.25-10_i386.deb Sample programs that use libsndfile
sndfile-tools_1.03-7build1_i386.deb Collection of programs for operating on sound files
sndio-tools_1.1.0-2_i386.deb Small audio and MIDI framework from OpenBSD, basic tools
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