snap_2013-11-29-1ubuntu2_i386.deb


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Description

snap - location of genes from DNA sequence with hidden markov model

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: snap
Package version: 2013
Package release: 11-29-1ubuntu2
Package architecture: i386
Package type: deb
Installed size: 2.62 KB
Download size: 366.40 KB
Official Mirror: archive.ubuntu.com
SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.

Alternatives

Requires

    Download

    Source package: snap

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install snap deb package:
      # sudo apt-get install snap

    Files

    • /usr/bin/exonpairs
    • /usr/bin/fathom
    • /usr/bin/forge
    • /usr/bin/hmm-assembler.pl
    • /usr/bin/hmm-info
    • /usr/bin/patch-hmm.pl
    • /usr/bin/snap-dna
    • /usr/bin/zff2gff3.pl
    • /usr/bin/zoe-loop
    • /usr/lib/snap/snap
    • /usr/share/doc/snap/00README.gz
    • /usr/share/doc/snap/README.Debian
    • /usr/share/doc/snap/README.test
    • /usr/share/doc/snap/changelog.Debian.gz
    • /usr/share/doc/snap/copyright
    • /usr/share/doc/snap/run-unit-test
    • /usr/share/doc/snap/examples/DNA/thale.dna.gz
    • /usr/share/doc/snap/examples/DNA/worm.dna.gz
    • /usr/share/man/man1/exonpairs.1.gz
    • /usr/share/man/man1/fathom.1.gz
    • /usr/share/man/man1/forge.1.gz
    • /usr/share/man/man1/hmm-assembler.pl.1.gz
    • /usr/share/man/man1/hmm-info.1.gz
    • /usr/share/man/man1/patch-hmm.pl.1.gz
    • /usr/share/man/man1/snap.1.gz
    • /usr/share/man/man1/zff2gff3.pl.1.gz
    • /usr/share/man/man1/zoe-loop.1.gz
    • /usr/share/snap/HMM/A.gambiae.hmm
    • /usr/share/snap/HMM/A.mellifera.hmm
    • /usr/share/snap/HMM/A.thaliana.hmm
    • /usr/share/snap/HMM/Acanium.hmm
    • /usr/share/snap/HMM/At.hmm
    • /usr/share/snap/HMM/B.malayi.hmm
    • /usr/share/snap/HMM/B.mori.hmm
    • /usr/share/snap/HMM/C.elegans.hmm
    • /usr/share/snap/HMM/C.intestinalis.hmm
    • /usr/share/snap/HMM/Ce.hmm
    • /usr/share/snap/HMM/D.melanogaster.hmm
    • /usr/share/snap/HMM/Dm.hmm
    • /usr/share/snap/HMM/Nasonia.hmm
    • /usr/share/snap/HMM/O.sativa.hmm
    • /usr/share/snap/HMM/Os.hmm
    • /usr/share/snap/HMM/README
    • /usr/share/snap/HMM/brugia
    • /usr/share/snap/HMM/ciona
    • /usr/share/snap/HMM/fly
    • /usr/share/snap/HMM/ixodesA.hmm
    • /usr/share/snap/HMM/ixodesB.hmm
    • /usr/share/snap/HMM/mam39-ro.hmm
    • /usr/share/snap/HMM/mam39.hmm
    • /usr/share/snap/HMM/mam46-ro.hmm
    • /usr/share/snap/HMM/mam46.hmm
    • /usr/share/snap/HMM/mam54-ro.hmm
    • /usr/share/snap/HMM/mam54.hmm
    • /usr/share/snap/HMM/mamiso.hmm
    • /usr/share/snap/HMM/minimal.hmm
    • /usr/share/snap/HMM/mosquito
    • /usr/share/snap/HMM/nGASP.hmm
    • /usr/share/snap/HMM/nGASPr.hmm
    • /usr/share/snap/HMM/rice
    • /usr/share/snap/HMM/thale
    • /usr/share/snap/HMM/worm
    • /usr/share/snap/HMM/worm1.hmm
    • /usr/share/snap/Zoe/blosum62

    Changelog

    2016-03-14 - Michael Vogt <michael.vogt@ubuntu.com> snap (2013-11-29-1ubuntu2) xenial; urgency=medium * fix ADT tests

    2016-03-11 - Michael Vogt <michael.vogt@ubuntu.com> snap (2013-11-29-1ubuntu1) xenial; urgency=medium * rename /usr/bin/snap to /usr/bin/snap-dna to avoid command clash with the ubuntu-snappy package

    2014-10-07 - Andreas Tille <tille@debian.org> snap (2013-11-29-1) unstable; urgency=medium * New upstream version Closes: #753849 * adapted watch file * moved debian/upstream to debian/upstrem/metadata * d/copyright: Exclude binary files without source (from OSX) * cme fix dpkg-control * add autopkgtest

    2013-10-25 - Andreas Tille <tille@debian.org> snap (2010-07-28-2) unstable; urgency=low * debian/upstream: Added citation information * debian/copyright: DEP5 issues * debian/README.Debian: - Removed information which is not intended for users - Added information about scripts which are not included into the package since some requriements are not yet fullfilled * debian/control: - cme fix dpkg-control - canonical Vcs fields * debhelper 9 (control+compat) * debian/patches/unused-but-set-variable.patch: Make sure package builds with hardening flags * debian/rules: - deleted useless comment - Work around self-made build system and save original files before configuration and restore these in clean target * debian/mans: create simple man pages by polishing help2man output * debian/bin/snap: wrapper to set environment variable ZOE to implement hint given in 00README installation instructions * debian/patches/hardening.patch: Propagate hardening options

    2011-06-17 - Steffen Moeller <moeller@debian.org> snap (2010-07-28-1~lucid1) lucid; urgency=low * Building for Debian PPA

    2011-06-17 - Steffen Moeller <moeller@debian.org> snap (2010-07-28-1) experimental; urgency=low * Crude initial release, lacking man pages (Closes: #630753).

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