snakemake_3.5.5+dfsg-1_all.deb


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Description

snakemake - pythonic workflow management system

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name snakemake
Package version 3.5.5+dfsg
Package release 1
Package architecture all
Package type deb
Installed size 5.86 KB
Download size 467.97 KB
Official Mirror archive.ubuntu.com
Build systems like GNU Make are frequently used to create complicated
workflows, e.g. in bioinformatics. This project aims to reduce the
complexity of creating workflows by providing a clean and modern domain
specific language (DSL) in Python style, together with a fast and
comfortable execution environment.

Alternatives

Package Version Architecture Repository
snakemake_3.5.5+dfsg-1_all.deb 3.5.5+dfsg all Ubuntu Universe
snakemake - - -

Requires

Name Value
ca-certificates -
libjs-mathjax -
libjs-sphinxdoc >= 1.0
python3-docutils -
python3-rpy2 -
python3-setuptools -
python3-yaml -
python3:any >= 3.3.2-2~

Download

Type URL
Binary Package snakemake_3.5.5+dfsg-1_all.deb
Source Package snakemake

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install snakemake deb package:
    # sudo apt-get install snakemake

Files

Path
/usr/bin/snakemake
/usr/bin/snakemake-bash-completion
/usr/lib/python3/dist-packages/snakemake/__init__.py
/usr/lib/python3/dist-packages/snakemake/dag.py
/usr/lib/python3/dist-packages/snakemake/decorators.py
/usr/lib/python3/dist-packages/snakemake/exceptions.py
/usr/lib/python3/dist-packages/snakemake/executors.py
/usr/lib/python3/dist-packages/snakemake/futures.py
/usr/lib/python3/dist-packages/snakemake/gui.html
/usr/lib/python3/dist-packages/snakemake/gui.py
/usr/lib/python3/dist-packages/snakemake/io.py
/usr/lib/python3/dist-packages/snakemake/jobs.py
/usr/lib/python3/dist-packages/snakemake/jobscript.sh
/usr/lib/python3/dist-packages/snakemake/logging.py
/usr/lib/python3/dist-packages/snakemake/output_index.py
/usr/lib/python3/dist-packages/snakemake/parser.py
/usr/lib/python3/dist-packages/snakemake/persistence.py
/usr/lib/python3/dist-packages/snakemake/report.css
/usr/lib/python3/dist-packages/snakemake/report.py
/usr/lib/python3/dist-packages/snakemake/rules.py
/usr/lib/python3/dist-packages/snakemake/scheduler.py
/usr/lib/python3/dist-packages/snakemake/script.py
/usr/lib/python3/dist-packages/snakemake/shell.py
/usr/lib/python3/dist-packages/snakemake/stats.py
/usr/lib/python3/dist-packages/snakemake/utils.py
/usr/lib/python3/dist-packages/snakemake/version.py
/usr/lib/python3/dist-packages/snakemake/workflow.py
/usr/lib/python3/dist-packages/snakemake/wrapper.py
/usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/not-zip-safe
/usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/top_level.txt
/usr/lib/python3/dist-packages/snakemake/remote/FTP.py
/usr/lib/python3/dist-packages/snakemake/remote/GS.py
/usr/lib/python3/dist-packages/snakemake/remote/HTTP.py
/usr/lib/python3/dist-packages/snakemake/remote/S3.py
/usr/lib/python3/dist-packages/snakemake/remote/SFTP.py
/usr/lib/python3/dist-packages/snakemake/remote/__init__.py
/usr/lib/python3/dist-packages/snakemake/remote/dropbox.py
/usr/share/doc-base/snakemake
/usr/share/doc/snakemake/changelog.Debian.gz
/usr/share/doc/snakemake/copyright
/usr/share/doc/snakemake/html/api.html
/usr/share/doc/snakemake/html/genindex.html
/usr/share/doc/snakemake/html/index.html
/usr/share/doc/snakemake/html/objects.inv
/usr/share/doc/snakemake/html/py-modindex.html
/usr/share/doc/snakemake/html/search.html
/usr/share/doc/snakemake/html/searchindex.js
/usr/share/doc/snakemake/html/utils.html
/usr/share/doc/snakemake/html/_modules/index.html
/usr/share/doc/snakemake/html/_modules/snakemake.html
/usr/share/doc/snakemake/html/_modules/snakemake/utils.html
/usr/share/doc/snakemake/html/_sources/api.txt
/usr/share/doc/snakemake/html/_sources/index.txt
/usr/share/doc/snakemake/html/_sources/utils.txt
/usr/share/doc/snakemake/html/_static/ajax-loader.gif
/usr/share/doc/snakemake/html/_static/basic.css
/usr/share/doc/snakemake/html/_static/bootstrap-sphinx.css
/usr/share/doc/snakemake/html/_static/bootstrap-sphinx.js
/usr/share/doc/snakemake/html/_static/comment-bright.png
/usr/share/doc/snakemake/html/_static/comment-close.png
/usr/share/doc/snakemake/html/_static/comment.png
/usr/share/doc/snakemake/html/_static/doctools.js
/usr/share/doc/snakemake/html/_static/down-pressed.png
/usr/share/doc/snakemake/html/_static/down.png
/usr/share/doc/snakemake/html/_static/file.png
/usr/share/doc/snakemake/html/_static/jquery.js
/usr/share/doc/snakemake/html/_static/minus.png
/usr/share/doc/snakemake/html/_static/plus.png
/usr/share/doc/snakemake/html/_static/pygments.css
/usr/share/doc/snakemake/html/_static/searchtools.js
/usr/share/doc/snakemake/html/_static/underscore.js
/usr/share/doc/snakemake/html/_static/up-pressed.png
/usr/share/doc/snakemake/html/_static/up.png
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap-responsive.css
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap-responsive.min.css
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap.css
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/img/glyphicons-halflings-white.png
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/img/glyphicons-halflings.png
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/js/bootstrap.js
/usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/js/bootstrap.min.js
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap-theme.css
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap-theme.css.map
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap-theme.min.css
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap.css
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap.css.map
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.eot.gz
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.svg
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.ttf.gz
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.woff.gz
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.woff2.gz
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/js/bootstrap.js
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/js/bootstrap.min.js
/usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/js/npm.js
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/amelia/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/cerulean/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/cosmo/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/cyborg/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/flatly/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/img/glyphicons-halflings-white.png
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/img/glyphicons-halflings.png
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/journal/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/readable/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/simplex/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/slate/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/spacelab/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/spruce/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/superhero/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/united/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/cerulean/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/cosmo/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/custom/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/cyborg/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/darkly/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/flatly/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.eot.gz
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.svg
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.ttf.gz
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.woff.gz
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.woff2.gz
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/journal/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/lumen/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/paper/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/readable/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/sandstone/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/simplex/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/slate/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/spacelab/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/superhero/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/united/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/yeti/bootstrap.min.css
/usr/share/doc/snakemake/html/_static/js/jquery-1.11.0.min.js
/usr/share/doc/snakemake/html/_static/js/jquery-fix.js
/usr/share/lintian/overrides/snakemake
/usr/share/man/man1/snakemake.1.gz

Changelog

2016-01-29 - Kevin Murray <spam@kdmurray.id.au>
snakemake (3.5.5+dfsg-1) unstable; urgency=low
* Imported new upstream version 3.5.5
* Use filenamemangle in d/watch
2015-12-17 - Kevin Murray <spam@kdmurray.id.au>
snakemake (3.5.4+dfsg-1) unstable; urgency=medium
* Imported Upstream version 3.5.4+dfsg
2015-11-19 - Kevin Murray <spam@kdmurray.id.au>
snakemake (3.4.2+dfsg-2) unstable; urgency=low
* Fix watch file and d/control with new upstream URL
2015-09-13 - Kevin Murray <spam@kdmurray.id.au>
snakemake (3.4.2+dfsg-1) unstable; urgency=low
* Initial release (Closes: #798824)

See Also

Package Description
snap_2013-11-29-1ubuntu2_i386.deb location of genes from DNA sequence with hidden markov model
snapcraft-examples_2.8.4_all.deb examples for snapcraft
snapcraft_2.8.4_all.deb easily craft snaps
snappea-dev_3.0d3-23ubuntu1_i386.deb development files for SnapPea hyperbolic 3-manifold tool
snappea_3.0d3-23ubuntu1_i386.deb program for creating and studying hyperbolic 3-manifolds
snapper_0.2.4-1ubuntu1_i386.deb Linux filesystem snapshot management tool
snappy_0.3.7-1.1_i386.deb Powerful media player with a minimalistic interface
snarf_7.0-6_i386.deb command-line URL grabber
snd-doc_16.1-5_all.deb Sound file editor (documentation)
snd-gtk-jack_16.1-5_i386.deb Sound file editor (GTK+ user interface - JACK)
snd-gtk-pulse_16.1-5_i386.deb Sound file editor (GTK+ user interface - PulseAudio)
snd-nox_16.1-5_i386.deb Sound file editor (cmdline)
snd_16.1-5_all.deb Sound file editor
sndfile-programs_1.0.25-10_i386.deb Sample programs that use libsndfile
sndfile-tools_1.03-7build1_i386.deb Collection of programs for operating on sound files
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