snakemake_3.5.5+dfsg-1_all.deb


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Description

snakemake - pythonic workflow management system

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: snakemake
Package version: 3.5.5+dfsg
Package release: 1
Package architecture: all
Package type: deb
Installed size: 5.86 KB
Download size: 467.97 KB
Official Mirror: archive.ubuntu.com
Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.

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    Source package: snakemake

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install snakemake deb package:
      # sudo apt-get install snakemake

    Files

    • /usr/bin/snakemake
    • /usr/bin/snakemake-bash-completion
    • /usr/lib/python3/dist-packages/snakemake/__init__.py
    • /usr/lib/python3/dist-packages/snakemake/dag.py
    • /usr/lib/python3/dist-packages/snakemake/decorators.py
    • /usr/lib/python3/dist-packages/snakemake/exceptions.py
    • /usr/lib/python3/dist-packages/snakemake/executors.py
    • /usr/lib/python3/dist-packages/snakemake/futures.py
    • /usr/lib/python3/dist-packages/snakemake/gui.html
    • /usr/lib/python3/dist-packages/snakemake/gui.py
    • /usr/lib/python3/dist-packages/snakemake/io.py
    • /usr/lib/python3/dist-packages/snakemake/jobs.py
    • /usr/lib/python3/dist-packages/snakemake/jobscript.sh
    • /usr/lib/python3/dist-packages/snakemake/logging.py
    • /usr/lib/python3/dist-packages/snakemake/output_index.py
    • /usr/lib/python3/dist-packages/snakemake/parser.py
    • /usr/lib/python3/dist-packages/snakemake/persistence.py
    • /usr/lib/python3/dist-packages/snakemake/report.css
    • /usr/lib/python3/dist-packages/snakemake/report.py
    • /usr/lib/python3/dist-packages/snakemake/rules.py
    • /usr/lib/python3/dist-packages/snakemake/scheduler.py
    • /usr/lib/python3/dist-packages/snakemake/script.py
    • /usr/lib/python3/dist-packages/snakemake/shell.py
    • /usr/lib/python3/dist-packages/snakemake/stats.py
    • /usr/lib/python3/dist-packages/snakemake/utils.py
    • /usr/lib/python3/dist-packages/snakemake/version.py
    • /usr/lib/python3/dist-packages/snakemake/workflow.py
    • /usr/lib/python3/dist-packages/snakemake/wrapper.py
    • /usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/PKG-INFO
    • /usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/dependency_links.txt
    • /usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/entry_points.txt
    • /usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/not-zip-safe
    • /usr/lib/python3/dist-packages/snakemake-3.5.5.egg-info/top_level.txt
    • /usr/lib/python3/dist-packages/snakemake/remote/FTP.py
    • /usr/lib/python3/dist-packages/snakemake/remote/GS.py
    • /usr/lib/python3/dist-packages/snakemake/remote/HTTP.py
    • /usr/lib/python3/dist-packages/snakemake/remote/S3.py
    • /usr/lib/python3/dist-packages/snakemake/remote/SFTP.py
    • /usr/lib/python3/dist-packages/snakemake/remote/__init__.py
    • /usr/lib/python3/dist-packages/snakemake/remote/dropbox.py
    • /usr/share/doc-base/snakemake
    • /usr/share/doc/snakemake/changelog.Debian.gz
    • /usr/share/doc/snakemake/copyright
    • /usr/share/doc/snakemake/html/api.html
    • /usr/share/doc/snakemake/html/genindex.html
    • /usr/share/doc/snakemake/html/index.html
    • /usr/share/doc/snakemake/html/objects.inv
    • /usr/share/doc/snakemake/html/py-modindex.html
    • /usr/share/doc/snakemake/html/search.html
    • /usr/share/doc/snakemake/html/searchindex.js
    • /usr/share/doc/snakemake/html/utils.html
    • /usr/share/doc/snakemake/html/_modules/index.html
    • /usr/share/doc/snakemake/html/_modules/snakemake.html
    • /usr/share/doc/snakemake/html/_modules/snakemake/utils.html
    • /usr/share/doc/snakemake/html/_sources/api.txt
    • /usr/share/doc/snakemake/html/_sources/index.txt
    • /usr/share/doc/snakemake/html/_sources/utils.txt
    • /usr/share/doc/snakemake/html/_static/ajax-loader.gif
    • /usr/share/doc/snakemake/html/_static/basic.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-sphinx.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-sphinx.js
    • /usr/share/doc/snakemake/html/_static/comment-bright.png
    • /usr/share/doc/snakemake/html/_static/comment-close.png
    • /usr/share/doc/snakemake/html/_static/comment.png
    • /usr/share/doc/snakemake/html/_static/doctools.js
    • /usr/share/doc/snakemake/html/_static/down-pressed.png
    • /usr/share/doc/snakemake/html/_static/down.png
    • /usr/share/doc/snakemake/html/_static/file.png
    • /usr/share/doc/snakemake/html/_static/jquery.js
    • /usr/share/doc/snakemake/html/_static/minus.png
    • /usr/share/doc/snakemake/html/_static/plus.png
    • /usr/share/doc/snakemake/html/_static/pygments.css
    • /usr/share/doc/snakemake/html/_static/searchtools.js
    • /usr/share/doc/snakemake/html/_static/underscore.js
    • /usr/share/doc/snakemake/html/_static/up-pressed.png
    • /usr/share/doc/snakemake/html/_static/up.png
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap-responsive.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap-responsive.min.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/css/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/img/glyphicons-halflings-white.png
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/img/glyphicons-halflings.png
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/js/bootstrap.js
    • /usr/share/doc/snakemake/html/_static/bootstrap-2.3.2/js/bootstrap.min.js
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap-theme.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap-theme.css.map
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap-theme.min.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap.css.map
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/css/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.eot.gz
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.svg
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.ttf.gz
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.woff.gz
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/fonts/glyphicons-halflings-regular.woff2.gz
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/js/bootstrap.js
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/js/bootstrap.min.js
    • /usr/share/doc/snakemake/html/_static/bootstrap-3.3.4/js/npm.js
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/amelia/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/cerulean/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/cosmo/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/cyborg/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/flatly/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/img/glyphicons-halflings-white.png
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/img/glyphicons-halflings.png
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/journal/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/readable/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/simplex/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/slate/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/spacelab/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/spruce/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/superhero/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-2.3.2/united/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/cerulean/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/cosmo/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/custom/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/cyborg/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/darkly/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/flatly/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.eot.gz
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.svg
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.ttf.gz
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.woff.gz
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/fonts/glyphicons-halflings-regular.woff2.gz
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/journal/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/lumen/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/paper/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/readable/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/sandstone/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/simplex/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/slate/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/spacelab/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/superhero/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/united/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/bootswatch-3.3.4/yeti/bootstrap.min.css
    • /usr/share/doc/snakemake/html/_static/js/jquery-1.11.0.min.js
    • /usr/share/doc/snakemake/html/_static/js/jquery-fix.js
    • /usr/share/lintian/overrides/snakemake
    • /usr/share/man/man1/snakemake.1.gz

    Changelog

    2016-01-29 - Kevin Murray <spam@kdmurray.id.au> snakemake (3.5.5+dfsg-1) unstable; urgency=low * Imported new upstream version 3.5.5 * Use filenamemangle in d/watch

    2015-12-17 - Kevin Murray <spam@kdmurray.id.au> snakemake (3.5.4+dfsg-1) unstable; urgency=medium * Imported Upstream version 3.5.4+dfsg

    2015-11-19 - Kevin Murray <spam@kdmurray.id.au> snakemake (3.4.2+dfsg-2) unstable; urgency=low * Fix watch file and d/control with new upstream URL

    2015-09-13 - Kevin Murray <spam@kdmurray.id.au> snakemake (3.4.2+dfsg-1) unstable; urgency=low * Initial release (Closes: #798824)

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