sigma-align_1.1.3-4_i386.deb


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Description

sigma-align - Simple greedy multiple alignment of non-coding DNA sequences

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: sigma-align
Package version: 1.1.3
Package release: 4
Package architecture: i386
Package type: deb
Installed size: 56 B
Download size: 22.94 KB
Official Mirror: archive.ubuntu.com
Sigma (“Simple greedy multiple alignment”) is an alignment program. It's algorithm and scoring scheme are designed specifically for non-coding DNA sequence. It uses a strategy of seeking the best possible gapless local alignments. This happens at each step making the best possible alignment consistent with existing alignments. It scores the significance of the alignment based on the lengths of the aligned fragments and a background model. These may be supplied or estimated from an auxiliary file of intergenic DNA.

Alternatives

    Download

    Source package: sigma-align

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install sigma-align deb package:
      # sudo apt-get install sigma-align

    Files

    • /usr/bin/sigma
    • /usr/share/doc/sigma-align/NOTES
    • /usr/share/doc/sigma-align/README
    • /usr/share/doc/sigma-align/changelog.Debian.gz
    • /usr/share/doc/sigma-align/copyright
    • /usr/share/man/man1/sigma.1.gz

    Changelog

    2016-01-11 - Andreas Tille <tille@debian.org> sigma-align (1.1.3-4) unstable; urgency=medium * Moved refrence data to debian/upstream/metadata * cme fix dpkg-control * debhelper 9 * Remove debian/reference which is redundant to debian/upstream/metadata

    2011-12-24 - Andreas Tille <tille@debian.org> sigma-align (1.1.3-3) unstable; urgency=low * Fix bug in long description Closes: #652922

    2011-12-16 - Andreas Tille <tille@debian.org> sigma-align (1.1.3-2) unstable; urgency=low [ Charles Plessy ] * Documented information in ‘debian/upstream-metadata.yaml’. * Converted debian/copyright to machine-readable format version 1.0. [Steffen Möller] * Split long description in two (Closes: #644663) [ Andreas Tille ] * debian/control: - Fixed Vcs fields - Standards-Version incremented to reflect compliance with Policy 3.9.2. - Long description less than 80 characters per line * Source format 3.0 (quilt) * debian/rules: dh instead of cdbs * Debhelper 8 (control+compat)

    2009-04-27 - Charles Plessy <plessy@debian.org> sigma-align (1.1.3-1) unstable; urgency=low * New upstream release. * Converted the packaging to CDBS. - debian/rules is much shorter. - CDBS will take care of updating config.guess and config.sub. - Created debian/docs and debian/manpages. * debian/control: - Updated my email address. - Incremented Standards-Version to reflect conformance with Policy 3.8.1 (no changes needed). - Depend on debhelper 7, cdbs and autotools-dev - Moved bibliographic information to debian/reference. - Use nice Unicode English quotes in the long descriptions. * debian/copyright: - Updated to latest version of the machine-readable format. - Incremented years and updated my email address. * Using debhelper 7 (debian/compat).

    2008-03-18 - Andreas Tille <tille@debian.org> sigma-align (1.1.1-3) unstable; urgency=low [ Nelson A. de Oliveira ] * Added watch file. [ David Paleino ] * debian/rules: failsafe $(MAKE) distclean. * Updated to Standards-Version 3.7.3 (no changes needed) [ Charles Plessy ] * debian/control: - Moved the Homepage: field out from the package's description. - Updated the VCS fields by removing their XS- prefix. - Suppressed an unclear sentence from the description. [ Andreas Tille ] * Added myself to uploaders

    2007-07-26 - Charles Plessy <charles-debian-nospam@plessy.org> sigma-align (1.1.1-2) unstable; urgency=low * Removed obsolete manpage in the debian directory. * Not rebuilding the manpage, and dropping corresponding build-dependencies.

    2007-04-08 - Charles Plessy <charles-debian-nospam@plessy.org> sigma-align (1.1.1-1) unstable; urgency=low * New upstream release. - 1.1 : complete rewrite in C. - 1.1.1 : fixes a building problem on powerpc. * Manpage adopted and updated by the upstream author of Sigma. * Add Subversion repository URL to debian/control.

    2006-09-05 - Charles Plessy <charles-debian-nospam@plessy.org> sigma-align (1.0-1) unstable; urgency=low * Initial release Closes: #378289

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