sibsim4_0.20-2_i386.deb 16.04 LTS Download

Description

sibsim4 - align expressed RNA sequences on a DNA template

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)

Repository: Ubuntu Universe i386

Package name: sibsim4

Package version: 0.20

Package release: 2

Package architecture: i386

Package type: deb

Installed size: 91 B

Download size: 30.66 KB

Official Mirror: archive.ubuntu.com

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals: * speed improvement; * allow large, chromosome scale, DNA sequences to be used; * provide more detailed output about splice types; * provide more detailed output about polyA sites; * misc code cleanups and fixes.

Alternatives

sibsim4 All Repositories
sibsim4_0.20-2_amd64.deb Ubuntu Universe

Requires

libc6 >= 2.4

Download

Binary package: sibsim4_0.20-2_i386.deb

Source package: sibsim4

Install Howto

Update the package index:
```
# sudo apt-get update
```
Install sibsim4 deb package:
```
# sudo apt-get install sibsim4
```

Files

/usr/bin/SIBsim4
/usr/share/doc/sibsim4/README.Debian
/usr/share/doc/sibsim4/changelog.Debian.gz
/usr/share/doc/sibsim4/copyright
/usr/share/man/man1/SIBsim4.1.gz

Changelog

2013-11-05 - Andreas Tille <tille@debian.org> sibsim4 (0.20-2) unstable; urgency=low * debian/control: - cme fix dpkg-control - canonical Vcs URLs - debhelper 9 * debian/rules: cdbs -> dh * debian/README.Debian: Took over some information from debian/copyright which actually belongs here * debian/copyright: DEP5 * debian/patches/hardening.patch: Propagate hardening options

2010-04-28 - Andreas Tille <tille@debian.org> sibsim4 (0.20-1) unstable; urgency=low * New upstream version * Added myself to uploaders * Standards-Version: 3.8.4 (no changes needed) * Source-Format: 3.0 (quilt) * Debhalper 7

2008-05-17 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.17-1) unstable; urgency=low * New upstream release.

2007-12-18 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.16-1) unstable; urgency=low [ Charles Plessy ] * Moved the Homepage: field out from the package's description; * Updated Vcs-* fields in debian/control; * Added DM-Upload-Allowed. [ Nelson A. de Oliveira ] * New upstream release; * Updated Standards Version to 3.7.3; * Removed unused debian/patches.

2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.15-2) unstable; urgency=low [ Nelson A. de Oliveira ] * I need to verify SVN before modifying a package... [ Charles Plessy ] * Add Subversion repository URL to debian/control.

2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.15-1) unstable; urgency=low * New upstream release.

2007-01-10 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.14-1) unstable; urgency=low * Initial release (Closes: #406286).