Description
sibsim4 - align expressed RNA sequences on a DNA template
| Property | Value |
|---|---|
| Distribution | Ubuntu 16.04 LTS (Xenial Xerus) |
| Repository | Ubuntu Universe i386 |
| Package name | sibsim4 |
| Package version | 0.20 |
| Package release | 2 |
| Package architecture | i386 |
| Package type | deb |
| Installed size | 91 B |
| Download size | 30.66 KB |
| Official Mirror | archive.ubuntu.com |
The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals: * speed improvement; * allow large, chromosome scale, DNA sequences to be used; * provide more detailed output about splice types; * provide more detailed output about polyA sites; * misc code cleanups and fixes.
Alternatives
| Package | Version | Architecture | Repository |
|---|---|---|---|
| sibsim4_0.20-2_amd64.deb | 0.20 | amd64 | Ubuntu Universe |
| sibsim4 | - | - | - |
Requires
| Name | Value |
|---|---|
| libc6 | >= 2.4 |
Download
| Type | URL |
|---|---|
| Binary Package | sibsim4_0.20-2_i386.deb |
| Source Package | sibsim4 |
Install Howto
- Update the package index:
# sudo apt-get update - Install sibsim4 deb package:
# sudo apt-get install sibsim4
Files
| Path |
|---|
| /usr/bin/SIBsim4 |
| /usr/share/doc/sibsim4/README.Debian |
| /usr/share/doc/sibsim4/changelog.Debian.gz |
| /usr/share/doc/sibsim4/copyright |
| /usr/share/man/man1/SIBsim4.1.gz |
Changelog
2013-11-05 - Andreas Tille <tille@debian.org> sibsim4 (0.20-2) unstable; urgency=low * debian/control: - cme fix dpkg-control - canonical Vcs URLs - debhelper 9 * debian/rules: cdbs -> dh * debian/README.Debian: Took over some information from debian/copyright which actually belongs here * debian/copyright: DEP5 * debian/patches/hardening.patch: Propagate hardening options
2010-04-28 - Andreas Tille <tille@debian.org> sibsim4 (0.20-1) unstable; urgency=low * New upstream version * Added myself to uploaders * Standards-Version: 3.8.4 (no changes needed) * Source-Format: 3.0 (quilt) * Debhalper 7
2008-05-17 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.17-1) unstable; urgency=low * New upstream release.
2007-12-18 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.16-1) unstable; urgency=low [ Charles Plessy ] * Moved the Homepage: field out from the package's description; * Updated Vcs-* fields in debian/control; * Added DM-Upload-Allowed. [ Nelson A. de Oliveira ] * New upstream release; * Updated Standards Version to 3.7.3; * Removed unused debian/patches.
2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.15-2) unstable; urgency=low [ Nelson A. de Oliveira ] * I need to verify SVN before modifying a package... [ Charles Plessy ] * Add Subversion repository URL to debian/control.
2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.15-1) unstable; urgency=low * New upstream release.
2007-01-10 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.14-1) unstable; urgency=low * Initial release (Closes: #406286).
See Also
| Package | Description |
|---|---|
| sic_1.1-5_i386.deb | simple irc client (sic) |
| sickle_1.33-1_i386.deb | windowed adaptive trimming tool for FASTQ files using quality |
| sidplay-base_1.0.9-7_i386.deb | Music player for tunes from C64 and C128 (console) |
| sidplay_2.0.9-6ubuntu3_i386.deb | Music player for tunes from C64 and C128 (console) |
| sidplayfp_1.4.0-1_i386.deb | Fork of sidplay2, a C64 and C128 music player |
| sieve-connect_0.87-1_all.deb | MANAGESIEVE protocol client |
| siggen_2.3.10-6build1_i386.deb | Waveform generation tools |
| sigil-data_0.9.5+dfsg-0ubuntu1_all.deb | multi-platform ebook editor - data files |
| sigil_0.9.5+dfsg-0ubuntu1_i386.deb | multi-platform ebook editor |
| sigma-align_1.1.3-4_i386.deb | Simple greedy multiple alignment of non-coding DNA sequences |
| signify-openbsd-keys_2015.1_all.deb | Public keys for use with signify-openbsd |
| signify-openbsd_13-1_i386.deb | Lightweight cryptographic signing and verifying tool |
| signify_1.14-3_all.deb | Automatic, semi-random ".signature" rotator/generator |
| signing-party_2.2-1_i386.deb | Various OpenPGP related tools |
| signon-apparmor-extension_0.1+15.04.20150203-0ubuntu2~gcc5.1_i386.deb | AppArmor access control extension for signond |
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