sibsim4_0.20-2_i386.deb


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Description

sibsim4 - align expressed RNA sequences on a DNA template

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: sibsim4
Package version: 0.20
Package release: 2
Package architecture: i386
Package type: deb
Installed size: 91 B
Download size: 30.66 KB
Official Mirror: archive.ubuntu.com
The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals: * speed improvement; * allow large, chromosome scale, DNA sequences to be used; * provide more detailed output about splice types; * provide more detailed output about polyA sites; * misc code cleanups and fixes.

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Requires

    Download

    Binary package: sibsim4_0.20-2_i386.deb
    Source package: sibsim4

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install sibsim4 deb package:
      # sudo apt-get install sibsim4

    Files

    • /usr/bin/SIBsim4
    • /usr/share/doc/sibsim4/README.Debian
    • /usr/share/doc/sibsim4/changelog.Debian.gz
    • /usr/share/doc/sibsim4/copyright
    • /usr/share/man/man1/SIBsim4.1.gz

    Changelog

    2013-11-05 - Andreas Tille <tille@debian.org> sibsim4 (0.20-2) unstable; urgency=low * debian/control: - cme fix dpkg-control - canonical Vcs URLs - debhelper 9 * debian/rules: cdbs -> dh * debian/README.Debian: Took over some information from debian/copyright which actually belongs here * debian/copyright: DEP5 * debian/patches/hardening.patch: Propagate hardening options

    2010-04-28 - Andreas Tille <tille@debian.org> sibsim4 (0.20-1) unstable; urgency=low * New upstream version * Added myself to uploaders * Standards-Version: 3.8.4 (no changes needed) * Source-Format: 3.0 (quilt) * Debhalper 7

    2008-05-17 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.17-1) unstable; urgency=low * New upstream release.

    2007-12-18 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.16-1) unstable; urgency=low [ Charles Plessy ] * Moved the Homepage: field out from the package's description; * Updated Vcs-* fields in debian/control; * Added DM-Upload-Allowed. [ Nelson A. de Oliveira ] * New upstream release; * Updated Standards Version to 3.7.3; * Removed unused debian/patches.

    2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.15-2) unstable; urgency=low [ Nelson A. de Oliveira ] * I need to verify SVN before modifying a package... [ Charles Plessy ] * Add Subversion repository URL to debian/control.

    2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.15-1) unstable; urgency=low * New upstream release.

    2007-01-10 - Nelson A. de Oliveira <naoliv@debian.org> sibsim4 (0.14-1) unstable; urgency=low * Initial release (Closes: #406286).

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