seqtk_1.0-1_i386.deb


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Description

seqtk - Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: seqtk
Package version: 1.0
Package release: 1
Package architecture: i386
Package type: deb
Installed size: 77 B
Download size: 18.07 KB
Official Mirror: archive.ubuntu.com
Currently, seqtk supports quality based trimming with the phred algorithm, converting fastq to fasta, reverse complementing sequences, extracting or masking subsequences in regions given in a BED/name list file, and more. It contains a subsampling module to sample exactly n sequences or a fraction of sequences. Seqtk supports both fasta and fastq input files, which can be optionally gzip compressed.

Alternatives

    Download

    Binary package: seqtk_1.0-1_i386.deb
    Source package: seqtk

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install seqtk deb package:
      # sudo apt-get install seqtk

    Files

    • /usr/bin/seqtk
    • /usr/share/doc/seqtk/changelog.Debian.gz
    • /usr/share/doc/seqtk/copyright
    • /usr/share/man/man1/seqtk.1.gz

    Changelog

    2014-02-01 - Andreas Tille <tille@debian.org> seqtk (1.0-1) unstable; urgency=low * Initial release (Closes: #737314)

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