seqprep_1.1-4ubuntu1_i386.deb


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Description

seqprep - stripping adaptors and/or merging paired reads of DNA sequences with overlap

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: seqprep
Package version: 1.1
Package release: 4ubuntu1
Package architecture: i386
Package type: deb
Installed size: 86 B
Download size: 25.88 KB
Official Mirror: archive.ubuntu.com
SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. When an adapter sequence is present, that means that the two reads must overlap (in most cases) so they are forcefully merged. When reads do not have adapter sequence they must be treated with care when doing the merging, so a much more specific approach is taken. The default parameters were chosen with specificity in mind, so that they could be ran on libraries where very few reads are expected to overlap. It is always safest though to save the overlapping procedure for libraries where you have some prior knowledge that a significant portion of the reads will have some overlap.

Alternatives

    Download

    Source package: seqprep

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install seqprep deb package:
      # sudo apt-get install seqprep

    Files

    • /usr/bin/seqprep
    • /usr/share/doc/seqprep/README.html
    • /usr/share/doc/seqprep/changelog.Debian.gz
    • /usr/share/doc/seqprep/copyright
    • /usr/share/man/man1/seqprep.1.gz

    Changelog

    2016-03-21 - Steve Langasek <steve.langasek@ubuntu.com> seqprep (1.1-4ubuntu1) xenial; urgency=medium * Add missing test dep on python (don't assume it's installed).

    2015-09-28 - Andreas Tille <tille@debian.org> seqprep (1.1-4) unstable; urgency=medium * Really apply patch created by Graham Inggs Closes: #789829

    2015-07-07 - Andreas Tille <tille@debian.org> seqprep (1.1-3) unstable; urgency=medium [ Andreas Tille ] * make sure autopkgtest script will not fail when cleaning up [ Graham Inggs ] * enable building with gcc-5 * fix clean target * replace all instances of the 'float' datatype in SeqPrep.c with 'double' Closes: #789829

    2015-06-21 - Andreas Tille <tille@debian.org> seqprep (1.1-2) unstable; urgency=medium * Do not try fiddle around with arch all files in arch indep builds Closes: #789488

    2015-02-20 - Andreas Tille <tille@debian.org> seqprep (1.1-1) unstable; urgency=medium * Initial Upload to Debian Closes: #778838

    2015-02-19 - Tim Booth <tbooth@ceh.ac.uk> seqprep (1.1-0biolinux1) trusty; urgency=medium * Initial release for Bio-Linux.

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