seqan-dev_1.4.1+dfsg-2_all.deb


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Description

seqan-dev - C++ library for the analysis of biological sequences (development)

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: seqan-dev
Package version: 1.4.1+dfsg
Package release: 2
Package architecture: all
Package type: deb
Installed size: 22.59 KB
Download size: 2.13 MB
Official Mirror: archive.ubuntu.com
SeqAn is a C++ template library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. This library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. This package contains the developer files, documentation and examples.

Alternatives

    Download

    Source package: seqan

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install seqan-dev deb package:
      # sudo apt-get install seqan-dev

    Files

    • /usr/include/seqan/align.h
    • /usr/include/seqan/arg_parse.h
    • /usr/include/seqan/bam_io.h
    • /usr/include/seqan/basic.h
    • /usr/include/seqan/consensus.h
    • /usr/include/seqan/file.h
    • /usr/include/seqan/find.h
    • /usr/include/seqan/gff_io.h
    • /usr/include/seqan/graph_algorithms.h
    • /usr/include/seqan/graph_align.h
    • /usr/include/seqan/graph_msa.h
    • /usr/include/seqan/graph_types.h
    • /usr/include/seqan/index.h
    • /usr/include/seqan/map.h
    • /usr/include/seqan/modifier.h
    • /usr/include/seqan/parallel.h
    • /usr/include/seqan/pipe.h
    • /usr/include/seqan/platform.h
    • /usr/include/seqan/random.h
    • /usr/include/seqan/score.h
    • /usr/include/seqan/seeds.h
    • /usr/include/seqan/seq_io.h
    • /usr/include/seqan/sequence.h
    • /usr/include/seqan/sequence_journaled.h
    • /usr/include/seqan/store.h
    • /usr/include/seqan/stream.h
    • /usr/include/seqan/system.h
    • /usr/include/seqan/version.h
    • /usr/include/seqan/align/INFO
    • /usr/include/seqan/align/align_base.h
    • /usr/include/seqan/align/align_cols.h
    • /usr/include/seqan/align/align_config.h
    • /usr/include/seqan/align/align_iterator_base.h
    • /usr/include/seqan/align/align_metafunctions.h
    • /usr/include/seqan/align/align_traceback.h
    • /usr/include/seqan/align/alignment_algorithm_tags.h
    • /usr/include/seqan/align/alignment_operations.h
    • /usr/include/seqan/align/dp_algorithm_impl.h
    • /usr/include/seqan/align/dp_band.h
    • /usr/include/seqan/align/dp_cell.h
    • /usr/include/seqan/align/dp_cell_affine.h
    • /usr/include/seqan/align/dp_cell_linear.h
    • /usr/include/seqan/align/dp_formula.h
    • /usr/include/seqan/align/dp_formula_affine.h
    • /usr/include/seqan/align/dp_formula_linear.h
    • /usr/include/seqan/align/dp_matrix.h
    • /usr/include/seqan/align/dp_matrix_navigator.h
    • /usr/include/seqan/align/dp_matrix_navigator_score_matrix.h
    • /usr/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
    • /usr/include/seqan/align/dp_matrix_navigator_trace_matrix.h
    • /usr/include/seqan/align/dp_matrix_sparse.h
    • /usr/include/seqan/align/dp_meta_info.h
    • /usr/include/seqan/align/dp_profile.h
    • /usr/include/seqan/align/dp_scout.h
    • /usr/include/seqan/align/dp_setup.h
    • /usr/include/seqan/align/dp_trace_segment.h
    • /usr/include/seqan/align/dp_traceback_adaptor.h
    • /usr/include/seqan/align/dp_traceback_impl.h
    • /usr/include/seqan/align/gap_anchor.h
    • /usr/include/seqan/align/gapped_value_type.h
    • /usr/include/seqan/align/gaps_anchor.h
    • /usr/include/seqan/align/gaps_array.h
    • /usr/include/seqan/align/gaps_base.h
    • /usr/include/seqan/align/gaps_iterator_anchor.h
    • /usr/include/seqan/align/gaps_iterator_array.h
    • /usr/include/seqan/align/gaps_iterator_base.h
    • /usr/include/seqan/align/global_alignment_banded.h
    • /usr/include/seqan/align/global_alignment_hirschberg_impl.h
    • /usr/include/seqan/align/global_alignment_myers_hirschberg_impl.h
    • /usr/include/seqan/align/global_alignment_myers_impl.h
    • /usr/include/seqan/align/global_alignment_specialized.h
    • /usr/include/seqan/align/global_alignment_unbanded.h
    • /usr/include/seqan/align/local_alignment_banded.h
    • /usr/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h
    • /usr/include/seqan/align/local_alignment_enumeration.h
    • /usr/include/seqan/align/local_alignment_enumeration_banded.h
    • /usr/include/seqan/align/local_alignment_enumeration_unbanded.h
    • /usr/include/seqan/align/local_alignment_unbanded.h
    • /usr/include/seqan/align/local_alignment_waterman_eggert_impl.h
    • /usr/include/seqan/align/matrix_base.h
    • /usr/include/seqan/arg_parse/INFO
    • /usr/include/seqan/arg_parse/arg_parse_argument.h
    • /usr/include/seqan/arg_parse/arg_parse_ctd_support.h
    • /usr/include/seqan/arg_parse/arg_parse_doc.h
    • /usr/include/seqan/arg_parse/arg_parse_exceptions.h
    • /usr/include/seqan/arg_parse/arg_parse_option.h
    • /usr/include/seqan/arg_parse/arg_parse_parse.h
    • /usr/include/seqan/arg_parse/arg_parse_type_support.h
    • /usr/include/seqan/arg_parse/argument_parser.h
    • /usr/include/seqan/arg_parse/tool_doc.h
    • /usr/include/seqan/arg_parse/xml_support.h
    • /usr/include/seqan/bam_io/INFO
    • /usr/include/seqan/bam_io/bam_alignment_record.h
    • /usr/include/seqan/bam_io/bam_alignment_record_util.h
    • /usr/include/seqan/bam_io/bam_header_record.h
    • /usr/include/seqan/bam_io/bam_index_bai.h
    • /usr/include/seqan/bam_io/bam_index_base.h
    • /usr/include/seqan/bam_io/bam_io_context.h
    • /usr/include/seqan/bam_io/bam_reader.h
    • /usr/include/seqan/bam_io/bam_sam_conversion.h
    • /usr/include/seqan/bam_io/bam_stream.h
    • /usr/include/seqan/bam_io/bam_tags_dict.h
    • /usr/include/seqan/bam_io/bam_writer.h
    • /usr/include/seqan/bam_io/cigar.h
    • /usr/include/seqan/bam_io/read_bam.h
    • /usr/include/seqan/bam_io/read_sam.h
    • /usr/include/seqan/bam_io/sam_reader.h
    • /usr/include/seqan/bam_io/sam_writer.h
    • /usr/include/seqan/bam_io/write_bam.h
    • /usr/include/seqan/bam_io/write_sam.h
    • /usr/include/seqan/bam_io/xam_reader.h
    • /usr/include/seqan/bam_io/xam_writer.h
    • /usr/include/seqan/basic/INFO
    • /usr/include/seqan/basic/aggregate_concept.h
    • /usr/include/seqan/basic/allocator_chunkpool.h
    • /usr/include/seqan/basic/allocator_interface.h
    • /usr/include/seqan/basic/allocator_multipool.h
    • /usr/include/seqan/basic/allocator_simple.h
    • /usr/include/seqan/basic/allocator_singlepool.h
    • /usr/include/seqan/basic/allocator_to_std.h
    • /usr/include/seqan/basic/alphabet_adapt_builtins.h
    • /usr/include/seqan/basic/alphabet_bio.h
    • /usr/include/seqan/basic/alphabet_concept.h
    • /usr/include/seqan/basic/alphabet_math.h
    • /usr/include/seqan/basic/alphabet_profile.h
    • /usr/include/seqan/basic/alphabet_qualities.h
    • /usr/include/seqan/basic/alphabet_residue.h
    • /usr/include/seqan/basic/alphabet_residue_tabs.h
    • /usr/include/seqan/basic/alphabet_simple_type.h
    • /usr/include/seqan/basic/alphabet_storage.h
    • /usr/include/seqan/basic/array_construct_destruct.h
    • /usr/include/seqan/basic/basic_aggregate.h
    • /usr/include/seqan/basic/basic_allocator.h
    • /usr/include/seqan/basic/basic_alphabet.h
    • /usr/include/seqan/basic/basic_concept.h
    • /usr/include/seqan/basic/basic_container.h
    • /usr/include/seqan/basic/basic_debug.h
    • /usr/include/seqan/basic/basic_fundamental.h
    • /usr/include/seqan/basic/basic_iterator.h
    • /usr/include/seqan/basic/basic_math.h
    • /usr/include/seqan/basic/basic_metaprogramming.h
    • /usr/include/seqan/basic/basic_parallelism.h
    • /usr/include/seqan/basic/basic_proxy.h
    • /usr/include/seqan/basic/basic_smart_pointer.h
    • /usr/include/seqan/basic/basic_tangle.h
    • /usr/include/seqan/basic/basic_type.h
    • /usr/include/seqan/basic/boost_preprocessor_subset.h
    • /usr/include/seqan/basic/builtin_functions.h
    • /usr/include/seqan/basic/concept_checking.h
    • /usr/include/seqan/basic/container_concept.h
    • /usr/include/seqan/basic/debug_helper.h
    • /usr/include/seqan/basic/debug_test_system.h
    • /usr/include/seqan/basic/fundamental_comparison.h
    • /usr/include/seqan/basic/fundamental_concepts.h
    • /usr/include/seqan/basic/fundamental_conversion.h
    • /usr/include/seqan/basic/fundamental_metafunctions.h
    • /usr/include/seqan/basic/fundamental_tags.h
    • /usr/include/seqan/basic/fundamental_transport.h
    • /usr/include/seqan/basic/holder_base.h
    • /usr/include/seqan/basic/holder_simple.h
    • /usr/include/seqan/basic/holder_tristate.h
    • /usr/include/seqan/basic/hosted_type_interface.h
    • /usr/include/seqan/basic/iterator_adapt_pointer.h
    • /usr/include/seqan/basic/iterator_adapt_std.h
    • /usr/include/seqan/basic/iterator_adaptor.h
    • /usr/include/seqan/basic/iterator_base.h
    • /usr/include/seqan/basic/iterator_concept.h
    • /usr/include/seqan/basic/iterator_interface.h
    • /usr/include/seqan/basic/iterator_position.h
    • /usr/include/seqan/basic/macro_deprecated.h
    • /usr/include/seqan/basic/math_functions.h
    • /usr/include/seqan/basic/math_log_space_value.h
    • /usr/include/seqan/basic/metaprogramming_control.h
    • /usr/include/seqan/basic/metaprogramming_enable_if.h
    • /usr/include/seqan/basic/metaprogramming_logic.h
    • /usr/include/seqan/basic/metaprogramming_math.h
    • /usr/include/seqan/basic/metaprogramming_type.h
    • /usr/include/seqan/basic/pair_base.h
    • /usr/include/seqan/basic/pair_bit_compressed.h
    • /usr/include/seqan/basic/pair_packed.h
    • /usr/include/seqan/basic/profiling.h
    • /usr/include/seqan/basic/proxy_base.h
    • /usr/include/seqan/basic/proxy_iterator.h
    • /usr/include/seqan/basic/test_system.h
    • /usr/include/seqan/basic/triple_base.h
    • /usr/include/seqan/basic/triple_packed.h
    • /usr/include/seqan/basic/tuple_base.h
    • /usr/include/seqan/basic/tuple_bit_compressed.h
    • /usr/include/seqan/basic/volatile_ptr.h
    • /usr/include/seqan/consensus/INFO
    • /usr/include/seqan/consensus/consensus_base.h
    • /usr/include/seqan/consensus/consensus_library.h
    • /usr/include/seqan/consensus/consensus_realign.h
    • /usr/include/seqan/consensus/consensus_score.h
    • /usr/include/seqan/file/INFO
    • /usr/include/seqan/file/chunk_collector.h
    • /usr/include/seqan/file/cstream.h
    • /usr/include/seqan/file/file_base.h
    • /usr/include/seqan/file/file_cstyle.h
    • /usr/include/seqan/file/file_filereader.h
    • /usr/include/seqan/file/file_filereaderiterator.h
    • /usr/include/seqan/file/file_format.h
    • /usr/include/seqan/file/file_format_cgviz.h
    • /usr/include/seqan/file/file_format_embl.h
    • /usr/include/seqan/file/file_format_fasta.h
    • /usr/include/seqan/file/file_format_fasta_align.h
    • /usr/include/seqan/file/file_format_genbank.h
    • /usr/include/seqan/file/file_format_guess.h
    • /usr/include/seqan/file/file_format_mmap.h
    • /usr/include/seqan/file/file_format_raw.h
    • /usr/include/seqan/file/file_forwards.h
    • /usr/include/seqan/file/file_interface.h
    • /usr/include/seqan/file/file_mapping.h
    • /usr/include/seqan/file/file_page.h
    • /usr/include/seqan/file/meta.h
    • /usr/include/seqan/file/stream.h
    • /usr/include/seqan/file/stream_algorithms.h
    • /usr/include/seqan/file/string_external.h
    • /usr/include/seqan/file/string_mmap.h
    • /usr/include/seqan/find/INFO
    • /usr/include/seqan/find/find_abndm.h
    • /usr/include/seqan/find/find_ahocorasick.h
    • /usr/include/seqan/find/find_base.h
    • /usr/include/seqan/find/find_begin.h
    • /usr/include/seqan/find/find_bndm.h
    • /usr/include/seqan/find/find_bom.h
    • /usr/include/seqan/find/find_hamming_simple.h
    • /usr/include/seqan/find/find_horspool.h
    • /usr/include/seqan/find/find_multi.h
    • /usr/include/seqan/find/find_multiple_bfam.h
    • /usr/include/seqan/find/find_multiple_shiftand.h
    • /usr/include/seqan/find/find_myers_ukkonen.h
    • /usr/include/seqan/find/find_pattern_base.h
    • /usr/include/seqan/find/find_pex.h
    • /usr/include/seqan/find/find_score.h
    • /usr/include/seqan/find/find_set_horspool.h
    • /usr/include/seqan/find/find_shiftand.h
    • /usr/include/seqan/find/find_shiftor.h
    • /usr/include/seqan/find/find_simple.h
    • /usr/include/seqan/find/find_wild_shiftand.h
    • /usr/include/seqan/find/find_wumanber.h
    • /usr/include/seqan/gff_io/INFO
    • /usr/include/seqan/gff_io/gff_io_base.h
    • /usr/include/seqan/gff_io/gff_io_context.h
    • /usr/include/seqan/gff_io/gff_stream.h
    • /usr/include/seqan/graph_algorithms/INFO
    • /usr/include/seqan/graph_algorithms/graph_algorithm.h
    • /usr/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h
    • /usr/include/seqan/graph_algorithms/graph_algorithm_hmm.h
    • /usr/include/seqan/graph_algorithms/graph_algorithm_lis_his.h
    • /usr/include/seqan/graph_align/INFO
    • /usr/include/seqan/graph_align/graph_algorithm_refine_align.h
    • /usr/include/seqan/graph_align/graph_algorithm_refine_aligngraph.h
    • /usr/include/seqan/graph_align/graph_algorithm_refine_annotation.h
    • /usr/include/seqan/graph_align/graph_algorithm_refine_exact.h
    • /usr/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h
    • /usr/include/seqan/graph_align/graph_algorithm_refine_fragment.h
    • /usr/include/seqan/graph_align/graph_algorithm_refine_inexact.h
    • /usr/include/seqan/graph_align/graph_algorithm_refine_scoring.h
    • /usr/include/seqan/graph_align/graph_impl_align.h
    • /usr/include/seqan/graph_align/graph_impl_align_adapt.h
    • /usr/include/seqan/graph_msa/INFO
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_base.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_distance.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_io.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_kmer.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_library.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_msa.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_progressive.h
    • /usr/include/seqan/graph_msa/graph_align_tcoffee_refinement.h
    • /usr/include/seqan/graph_types/INFO
    • /usr/include/seqan/graph_types/graph_base.h
    • /usr/include/seqan/graph_types/graph_drawing.h
    • /usr/include/seqan/graph_types/graph_edgestump.h
    • /usr/include/seqan/graph_types/graph_idmanager.h
    • /usr/include/seqan/graph_types/graph_impl_automaton.h
    • /usr/include/seqan/graph_types/graph_impl_directed.h
    • /usr/include/seqan/graph_types/graph_impl_fragment.h
    • /usr/include/seqan/graph_types/graph_impl_hmm.h
    • /usr/include/seqan/graph_types/graph_impl_oracle.h
    • /usr/include/seqan/graph_types/graph_impl_tree.h
    • /usr/include/seqan/graph_types/graph_impl_trie.h
    • /usr/include/seqan/graph_types/graph_impl_undirected.h
    • /usr/include/seqan/graph_types/graph_impl_wordgraph.h
    • /usr/include/seqan/graph_types/graph_interface.h
    • /usr/include/seqan/graph_types/graph_iterator.h
    • /usr/include/seqan/graph_types/graph_iterator_adjacency.h
    • /usr/include/seqan/graph_types/graph_iterator_bfs.h
    • /usr/include/seqan/graph_types/graph_iterator_dfs.h
    • /usr/include/seqan/graph_types/graph_iterator_edge.h
    • /usr/include/seqan/graph_types/graph_iterator_outedge.h
    • /usr/include/seqan/graph_types/graph_iterator_vertex.h
    • /usr/include/seqan/graph_types/graph_property.h
    • /usr/include/seqan/graph_types/graph_utility_parsing.h
    • /usr/include/seqan/index/INFO
    • /usr/include/seqan/index/find_index.h
    • /usr/include/seqan/index/find_index_approx.h
    • /usr/include/seqan/index/find_index_esa.h
    • /usr/include/seqan/index/find_index_qgram.h
    • /usr/include/seqan/index/find_pigeonhole.h
    • /usr/include/seqan/index/find_quasar.h
    • /usr/include/seqan/index/find_swift.h
    • /usr/include/seqan/index/index_base.h
    • /usr/include/seqan/index/index_bwt.h
    • /usr/include/seqan/index/index_childtab.h
    • /usr/include/seqan/index/index_dfi.h
    • /usr/include/seqan/index/index_esa_algs.h
    • /usr/include/seqan/index/index_esa_algs_multi.h
    • /usr/include/seqan/index/index_esa_base.h
    • /usr/include/seqan/index/index_esa_drawing.h
    • /usr/include/seqan/index/index_esa_stree.h
    • /usr/include/seqan/index/index_fm.h
    • /usr/include/seqan/index/index_fm_compressed_sa.h
    • /usr/include/seqan/index/index_fm_compressed_sa_iterator.h
    • /usr/include/seqan/index/index_fm_doc.h
    • /usr/include/seqan/index/index_fm_dox.h
    • /usr/include/seqan/index/index_fm_lf_table.h
    • /usr/include/seqan/index/index_fm_prefix_sum_table.h
    • /usr/include/seqan/index/index_fm_rank_dictionary_bms.h
    • /usr/include/seqan/index/index_fm_rank_dictionary_wt.h
    • /usr/include/seqan/index/index_fm_rank_support_bit_string.h
    • /usr/include/seqan/index/index_fm_rank_support_bit_string_iterator.h
    • /usr/include/seqan/index/index_fm_right_array_binary_tree.h
    • /usr/include/seqan/index/index_fm_right_array_binary_tree_iterator.h
    • /usr/include/seqan/index/index_fm_sentinel_rank_dictionary.h
    • /usr/include/seqan/index/index_fm_sparse_string.h
    • /usr/include/seqan/index/index_fm_stree.h
    • /usr/include/seqan/index/index_forwards.h
    • /usr/include/seqan/index/index_lcp.h
    • /usr/include/seqan/index/index_lcp_tree.h
    • /usr/include/seqan/index/index_pizzachili.h
    • /usr/include/seqan/index/index_pizzachili_find.h
    • /usr/include/seqan/index/index_pizzachili_string.h
    • /usr/include/seqan/index/index_qgram.h
    • /usr/include/seqan/index/index_qgram_openaddressing.h
    • /usr/include/seqan/index/index_sa_btree.h
    • /usr/include/seqan/index/index_sa_bwtwalk.h
    • /usr/include/seqan/index/index_sa_lss.h
    • /usr/include/seqan/index/index_sa_mm.h
    • /usr/include/seqan/index/index_sa_qsort.h
    • /usr/include/seqan/index/index_shawarma.h
    • /usr/include/seqan/index/index_shims.h
    • /usr/include/seqan/index/index_skew3.h
    • /usr/include/seqan/index/index_skew7.h
    • /usr/include/seqan/index/index_skew7_multi.h
    • /usr/include/seqan/index/index_wotd.h
    • /usr/include/seqan/index/pipe_merger3.h
    • /usr/include/seqan/index/pipe_merger7.h
    • /usr/include/seqan/index/pizzachili_api.h
    • /usr/include/seqan/index/pump_extender3.h
    • /usr/include/seqan/index/pump_extender7.h
    • /usr/include/seqan/index/pump_lcp_core.h
    • /usr/include/seqan/index/pump_separator7.h
    • /usr/include/seqan/index/radix.h
    • /usr/include/seqan/index/repeat_base.h
    • /usr/include/seqan/index/shape_base.h
    • /usr/include/seqan/index/shape_gapped.h
    • /usr/include/seqan/index/shape_onegapped.h
    • /usr/include/seqan/index/shape_predefined.h
    • /usr/include/seqan/index/shape_threshold.h
    • /usr/include/seqan/map/INFO
    • /usr/include/seqan/map/map_adapter_stl.h
    • /usr/include/seqan/map/map_base.h
    • /usr/include/seqan/map/map_chooser.h
    • /usr/include/seqan/map/map_skiplist.h
    • /usr/include/seqan/map/map_vector.h
    • /usr/include/seqan/map/sumlist.h
    • /usr/include/seqan/map/sumlist_mini.h
    • /usr/include/seqan/map/sumlist_skip.h
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    Changelog

    2014-09-01 - Andreas Tille <tille@debian.org> seqan (1.4.1+dfsg-2) unstable; urgency=medium * Do proper manipulation of build options (thanks for the hint to Etienne Millon <me@emillon.org>) Closes: #759978, #752558

    2014-07-31 - Andreas Tille <tille@debian.org> seqan (1.4.1+dfsg-1) unstable; urgency=medium * Fix FTBFS on many buildds due to RAM exhaustion (thanks to Dejan Latinovic <Dejan.Latinovic@imgtec.com> for the patch) Closes: #741288 * debian/copyright (watch+rules): Remove compressed and unused JS files from upstream source

    2014-01-28 - Andreas Tille <tille@debian.org> seqan (1.4.1-3) unstable; urgency=medium * debian/rules: - Run test suite only on powerfull architectures (amd64) at build time * deacticate test for apps splazers which fails since some point in time after uploading 1.4.1-2 Closes: #733250

    2013-11-29 - Andreas Tille <tille@debian.org> seqan (1.4.1-2) unstable; urgency=low * debian/seqan-apps.links: s/mason/seqan_mason Closes: #730751

    2013-11-27 - Andreas Tille <tille@debian.org> seqan (1.4.1-1) unstable; urgency=low * New upstream version (patch became unneeded) Closes: #720995 * debian/upstream: - Moved DOI+PMID to References - Added eprint * debian/reference: Deleted in favour of data in debian/upstream * debian/watch: adapted to changes at upstream * debian/orig-tar.sh: Removed because the removed file is not part of the source any more * debian/control: - debhelper 9 - remove cdbs from / add python to Build-Depends - cme fix dpkg-control - canonical Vcs URLs * debian/copyright: - DEP5 - Add Upstream-Contact according to latest discussion - Update Source to actual download tarball * debian/rules: - cdbs -> dh - Need to rename /usr/bin/join to /usr/bin/seqan-join to avoid name clash with coreutils * debian/generate_manpages: use help2man to autogenerate manpages * debian/README.Debian: Describe what apps go to /usr/bin and why * debian/seqan-apps.links: Update apps that should go to /usr/bin according to mail from upstream

    2012-04-23 - Andreas Tille <tille@debian.org> seqan (1.3.1-1) unstable; urgency=low * New upstream version * debian/watch: Adapt to new way to provide release archives * debian/orig-tar.sh: - Be less noisy - Provide fallback target dir in case .svn/deb-layout doese not exist - which is the case at least in my checkout * debian/control: - Standards-Version: 3.9.3 (no changes needed) - distinct short descriptions * debian/seqan-dev.doc-base: Provide doc-base control file * debian/rules + several debhelper files: Rely more on debhelper than manual moving around files to make debian/rules better maintaineable * debian/rules: - Do not specify single target files but rather use find to obtain files to move around - Save a copy of those files which will be removed by upstream clean target otherwise to enable building twice in a row

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