seq-gen_1.3.3-1_i386.deb


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Description

seq-gen - simulate the evolution of nucleotide or amino acid sequences

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name seq-gen
Package version 1.3.3
Package release 1
Package architecture i386
Package type deb
Installed size 184 B
Download size 64.43 KB
Official Mirror archive.ubuntu.com
Seq-Gen is a program that will simulate the evolution of nucleotide
or amino acid sequences along a phylogeny, using common models of the
substitution process. A range of models of molecular evolution are
implemented including the general reversible model. State frequencies
and other parameters of the model may be given and site-specific rate
heterogeneity may also be incorporated in a number of ways. Any number
of trees may be read in and the program will produce any number of data
sets for each tree. Thus large sets of replicate simulations can be
easily created. It has been designed to be a general purpose simulator
that incorporates most of the commonly used
(and computationally tractable) models of molecular sequence evolution.

Alternatives

Package Version Architecture Repository
seq-gen_1.3.3-1_amd64.deb 1.3.3 amd64 Ubuntu Universe
seq-gen - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Binary Package seq-gen_1.3.3-1_i386.deb
Source Package seq-gen

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install seq-gen deb package:
    # sudo apt-get install seq-gen

Files

Path
/usr/bin/seq-gen
/usr/share/doc-base/seq-gen
/usr/share/doc/seq-gen/Seq-Gen.Manual.html
/usr/share/doc/seq-gen/Using_Seq-Gen_with_PAUP
/usr/share/doc/seq-gen/changelog.Debian.gz
/usr/share/doc/seq-gen/copyright
/usr/share/doc/seq-gen/examples/example.tree
/usr/share/doc/seq-gen/examples/heterogeneity.tree
/usr/share/doc/seq-gen/examples/recombinant.tree
/usr/share/man/man1/seq-gen.1.gz

Changelog

2012-03-29 - Andreas Tille <tille@debian.org>
seq-gen (1.3.3-1) unstable; urgency=low
[ Alexandre Mestiashvili ]
* New upstream release 1.3.3 
* debian/control section changed to non-free/science
* fixed debian/watch and debian/get-orig-source scripts
* debian/seq-gen.1 fixed hyphen-used-as-minus-sign warning
[ Andreas Tille ]
* debian/control: Fixed Vcs fields
* debian/upstream: Added citations
* debhelper level 9 (control+compat)
2011-10-27 - Andreas Tille <tille@debian.org>
seq-gen (1.3.2-2) unstable; urgency=low
[ Alexandre Mestiashvili ]
* fixed syntax-error-in-dep5-copyright warning  
[ Andreas Tille ]
* Standards-Version: 3.9.2 (no changes needed)
* debian/copyright:
- License paragraph for packaging
- License ist actually BSD license
* Debhelper 8 (control+compat)
2011-03-03 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
seq-gen (1.3.2-1) unstable; urgency=low
* Initial release (Closes: #617340)

See Also

Package Description
seq24_0.9.3-1_i386.deb Real time MIDI sequencer
seqan-apps_1.4.1+dfsg-2_i386.deb C++ library for the analysis of biological sequences
seqan-dev_1.4.1+dfsg-2_all.deb C++ library for the analysis of biological sequences (development)
seqprep-data_1.1-4ubuntu1_all.deb example data set for seqprep - only used for testing
seqprep_1.1-4ubuntu1_i386.deb stripping adaptors and/or merging paired reads of DNA sequences with overlap
seqtk_1.0-1_i386.deb Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
ser2net_2.9.1-1_i386.deb Serial port to network proxy
serdi_0.22.0~dfsg0-2_i386.deb lightweight RDF syntax library - serdi tool
serf_0.6.4~ds1-1_i386.deb Service orchestration and management tool
servefile_0.4.4-1_all.deb serve or receive files from shell via a small HTTP server
serverspec-runner_0.2.4-2_all.deb simple execution framework for serverspec
serverstats_0.8.2-11ubuntu1_all.deb simple tool for creating graphs using rrdtool
service-wrapper_3.5.26-3_i386.deb Jar daemon wrapper
set6x86_1.5-14_i386.deb Cyrix/IBM 5x86/6x86 CPU configuration tool
setbfree_0.8.0-1_i386.deb DSP tonewheel organ
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