seq-gen_1.3.3-1_i386.deb


Advertisement

Description

seq-gen - simulate the evolution of nucleotide or amino acid sequences

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: seq-gen
Package version: 1.3.3
Package release: 1
Package architecture: i386
Package type: deb
Installed size: 184 B
Download size: 64.43 KB
Official Mirror: archive.ubuntu.com
Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process. A range of models of molecular evolution are implemented including the general reversible model. State frequencies and other parameters of the model may be given and site-specific rate heterogeneity may also be incorporated in a number of ways. Any number of trees may be read in and the program will produce any number of data sets for each tree. Thus large sets of replicate simulations can be easily created. It has been designed to be a general purpose simulator that incorporates most of the commonly used (and computationally tractable) models of molecular sequence evolution.

Alternatives

Requires

    Download

    Binary package: seq-gen_1.3.3-1_i386.deb
    Source package: seq-gen

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install seq-gen deb package:
      # sudo apt-get install seq-gen

    Files

    • /usr/bin/seq-gen
    • /usr/share/doc-base/seq-gen
    • /usr/share/doc/seq-gen/Seq-Gen.Manual.html
    • /usr/share/doc/seq-gen/Using_Seq-Gen_with_PAUP
    • /usr/share/doc/seq-gen/changelog.Debian.gz
    • /usr/share/doc/seq-gen/copyright
    • /usr/share/doc/seq-gen/examples/example.tree
    • /usr/share/doc/seq-gen/examples/heterogeneity.tree
    • /usr/share/doc/seq-gen/examples/recombinant.tree
    • /usr/share/man/man1/seq-gen.1.gz

    Changelog

    2012-03-29 - Andreas Tille <tille@debian.org> seq-gen (1.3.3-1) unstable; urgency=low [ Alexandre Mestiashvili ] * New upstream release 1.3.3 * debian/control section changed to non-free/science * fixed debian/watch and debian/get-orig-source scripts * debian/seq-gen.1 fixed hyphen-used-as-minus-sign warning [ Andreas Tille ] * debian/control: Fixed Vcs fields * debian/upstream: Added citations * debhelper level 9 (control+compat)

    2011-10-27 - Andreas Tille <tille@debian.org> seq-gen (1.3.2-2) unstable; urgency=low [ Alexandre Mestiashvili ] * fixed syntax-error-in-dep5-copyright warning [ Andreas Tille ] * Standards-Version: 3.9.2 (no changes needed) * debian/copyright: - License paragraph for packaging - License ist actually BSD license * Debhelper 8 (control+compat)

    2011-03-03 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de> seq-gen (1.3.2-1) unstable; urgency=low * Initial release (Closes: #617340)

    Advertisement
    Advertisement