scythe_0.994-3_i386.deb


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Description

scythe - Bayesian adaptor trimmer for sequencing reads

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe i386
Package name scythe
Package version 0.994
Package release 3
Package architecture i386
Package type deb
Installed size 48 B
Download size 17.53 KB
Official Mirror archive.ubuntu.com
Scythe uses a Naive Bayesian approach to classify contaminant substrings in
sequence reads. It considers quality information, which can make it robust in
picking out 3'-end adapters, which often include poor quality bases.

Alternatives

Package Version Architecture Repository
scythe_0.994-3_amd64.deb 0.994 amd64 Ubuntu Universe
scythe - - -

Requires

Name Value
libc6 >= 2.4
zlib1g >= 1:1.1.4

Download

Type URL
Binary Package scythe_0.994-3_i386.deb
Source Package scythe

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install scythe deb package:
    # sudo apt-get install scythe

Files

Path
/usr/bin/scythe
/usr/share/doc/scythe/README.Debian
/usr/share/doc/scythe/README.html
/usr/share/doc/scythe/changelog.Debian.gz
/usr/share/doc/scythe/copyright
/usr/share/doc/scythe/illumina_adapters.fa
/usr/share/man/man1/scythe.1.gz

Changelog

2016-03-17 - Kevin Murray <spam@kdmurray.id.au>
scythe (0.994-3) unstable; urgency=medium
[ Kevin Murray ]
* Comment out watchfile, upstream doesn't actually provide tags on github
* Fix vcs git URL
* Bump standards version
[ Mattia Rizzolo ]
* debian/rules: remove useless include
2015-10-19 - Kevin Murray <spam@kdmurray.id.au>
scythe (0.994-2) unstable; urgency=low
* Fix copyright of kseq.h in d/control
* Patch Makefile to pull in hardening flags correctly
* Add compiled readme to gitignore
2015-01-25 - Kevin Murray <spam@kdmurray.id.au>
scythe (0.994-1) unstable; urgency=medium
* Initial release. (Closes: #776179)

See Also

Package Description
sd_0.75-1_all.deb peer-to-peer bug tracker
sdate_0.4_i386.deb never ending September date
sdb_1.2-1_all.deb a command line client for Mono's soft debugger
sdcc-doc_3.5.0+dfsg-2_all.deb Small Device C Compiler (documentation)
sdcc-libraries_3.5.0+dfsg-2_all.deb Small Device C Compiler (libraries)
sdcc-ucsim_3.5.0+dfsg-2_i386.deb Micro-controller simulator for SDCC
sdcc_3.5.0+dfsg-2_i386.deb Small Device C Compiler
sdcv_0.5.0~beta4-1_i386.deb StarDict Console Version
sddm-theme-breeze_5.5.5.2-0ubuntu1_i386.deb Breeze SDDM theme
sddm-theme-circles_0.13.0-1ubuntu5_all.deb 'Circles' theme for SDDM X11 display manager
sddm-theme-elarun_0.13.0-1ubuntu5_all.deb 'Elarun' Theme for SDDM X11 display manager
sddm-theme-lubuntu-chooser_0.61_all.deb 'Lubuntu chooser' theme for SDDM X11 display manager
sddm-theme-maldives_0.13.0-1ubuntu5_all.deb 'Maldives' theme for SDDM X11 display manager
sddm-theme-maui_0.13.0-1ubuntu5_all.deb 'Maui' theme for SDDM X11 display manager
sddm_0.13.0-1ubuntu5_i386.deb modern display manager for X11
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