saint_2.5.0+dfsg-2_i386.deb


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Description

saint - Significance Analysis of INTeractome

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe i386
Package name: saint
Package version: 2.5.0+dfsg
Package release: 2
Package architecture: i386
Package type: deb
Installed size: 332 B
Download size: 83.20 KB
Official Mirror: archive.ubuntu.com
SAINT implements the scoring algorithm for protein-protein interaction data using label free quantitative proteomics data in AP-MS experiments. It was used for spectral count data in the yeast kinase interactome work not incorporating control purification, as well as a generalized implementation for spectral count data with and without control purification. Alternatively, you can also run SAINT in combination with ProHits. The package was written for either doing analysis without or with control IPs and

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    Source package: saint

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install saint deb package:
      # sudo apt-get install saint

    Files

    • /usr/bin/saint-int-ctrl
    • /usr/bin/saint-reformat
    • /usr/bin/saint-spc-ctrl
    • /usr/bin/saint-spc-noctrl
    • /usr/bin/saint-spc-noctrl-matrix
    • /usr/share/doc/saint/README.Debian
    • /usr/share/doc/saint/changelog.Debian.gz
    • /usr/share/doc/saint/copyright
    • /usr/share/man/man1/saint-int-ctrl.1.gz
    • /usr/share/man/man1/saint-reformat.1.gz
    • /usr/share/man/man1/saint-spc-ctrl.1.gz
    • /usr/share/man/man1/saint-spc-noctrl-matrix.1.gz
    • /usr/share/man/man1/saint-spc-noctrl.1.gz

    Changelog

    2015-12-08 - Andreas Tille <tille@debian.org> saint (2.5.0+dfsg-2) unstable; urgency=medium [ Bas Couwenberg ] * Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev. Closes: #807225 [ Andreas Tille ] * Move from SVN to Git

    2015-11-09 - Andreas Tille <tille@debian.org> saint (2.5.0+dfsg-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control

    2014-08-22 - Andreas Tille <tille@debian.org> saint (2.4.0+dfsg-1) unstable; urgency=medium * New upstream version * adapted get-orig-source target to new uscan syntax * d/watch: uversionmangle * cme fix dpkg-control

    2013-06-01 - Thorsten Alteholz <debian@alteholz.de> saint (2.3.4+dfsg-2) unstable; urgency=low * add patch ld-as-needed.patch from Julian Taylor (Closes: #710364)

    2013-05-16 - Thorsten Alteholz <debian@alteholz.de> saint (2.3.4+dfsg-1) unstable; urgency=low * new upstream version * debian/control: bump standard to 3.9.4 (no changes needed) [Andreas Tille] * debian/copyright: - Add Files-Excluded to document what was removed from original source

    2012-04-24 - Andreas Tille <tille@debian.org> saint (2.3.3-1) unstable; urgency=low * Initial Release (Closes: #671224)

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