python-skbio_0.4.1-1_amd64.deb


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Description

python-skbio - Python data structures, algorithms, educational resources for bioinformatics

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-skbio
Package version: 0.4.1
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 3.13 KB
Download size: 478.64 KB
Official Mirror: archive.ubuntu.com
Scikit-bio is a Python package providing data structures, algorithms, and educational resources for bioinformatics. This is the package for Python2

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    Download

    Source package: python-skbio

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-skbio deb package:
      # sudo apt-get install python-skbio

    Files

    • /usr/lib/python2.7/dist-packages/benchmarks/__init__.py
    • /usr/lib/python2.7/dist-packages/benchmarks/benchmarks.py
    • /usr/lib/python2.7/dist-packages/scikit_bio-0.4.1.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/scikit_bio-0.4.1.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/scikit_bio-0.4.1.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/scikit_bio-0.4.1.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/skbio/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/_base.py
    • /usr/lib/python2.7/dist-packages/skbio/test.py
    • /usr/lib/python2.7/dist-packages/skbio/workflow.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/_indexing.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/_pairwise.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/_repr.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/_ssw_wrapper.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/skbio/alignment/_tabular_msa.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/_lib/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/tests/test_pairwise.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/tests/test_ssw.py
    • /usr/lib/python2.7/dist-packages/skbio/alignment/tests/test_tabular_msa.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/_driver.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/_phylogenetic.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/skbio/diversity/_util.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/_ace.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/_base.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/_chao1.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/_faith_pd.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/_gini.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/_lladser.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/test_ace.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/test_base.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/test_chao1.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/test_faith_pd.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/test_gini.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/test_lladser.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv
    • /usr/lib/python2.7/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/_unifrac.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/test_unifrac.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/README.md
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt
    • /usr/lib/python2.7/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt
    • /usr/lib/python2.7/dist-packages/skbio/diversity/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/tests/test_driver.py
    • /usr/lib/python2.7/dist-packages/skbio/diversity/tests/test_util.py
    • /usr/lib/python2.7/dist-packages/skbio/io/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/io/_exception.py
    • /usr/lib/python2.7/dist-packages/skbio/io/_fileobject.py
    • /usr/lib/python2.7/dist-packages/skbio/io/_iosources.py
    • /usr/lib/python2.7/dist-packages/skbio/io/_warning.py
    • /usr/lib/python2.7/dist-packages/skbio/io/registry.py
    • /usr/lib/python2.7/dist-packages/skbio/io/util.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/_base.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/_blast.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/blast6.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/blast7.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/clustal.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/emptyfile.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/fasta.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/fastq.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/genbank.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/lsmat.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/newick.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/ordination.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/phylip.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/qseq.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_base.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_blast6.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_blast7.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_clustal.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_emptyfile.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_fasta.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_fastq.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_genbank.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_lsmat.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_newick.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_ordination.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_phylip.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/test_qseq.py
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_custom_minimal
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_custom_mixed_nans
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_custom_multi_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_custom_single_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_default_multi_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_default_single_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_invalid_column_types
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_invalid_number_of_columns
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast6_invalid_type_in_column
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_custom_minimal
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_custom_mixed_nans
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_custom_multi_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_custom_single_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_default_multi_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_default_single_line
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_invalid_differing_fields
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_invalid_for_sniffer
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_invalid_gibberish
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_invalid_no_data
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_invalid_too_many_columns
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/blast7_invalid_unrecognized_field
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/empty
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_diff_ids.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_double_qual.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_double_seq.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_long_qual.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_no_qual.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_qual_del.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_qual_escape.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_qual_null.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_qual_space.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_qual_tab.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_qual_unit_sep.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_qual_vtab.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_short_qual.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_spaces.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_tabs.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_trunc_at_plus.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_trunc_at_qual.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_trunc_at_seq.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_trunc_in_plus.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_trunc_in_qual.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_trunc_in_seq.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/error_trunc_in_title.fastq
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_10_seqs
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_3_seqs_defaults
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_3_seqs_non_defaults
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_5_blanks_start_of_file
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file
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    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_blank_lines_between_records
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_blanks_end_of_file
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_description_newline_replacement_none
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_id_whitespace_replacement_none
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_invalid_after_10_seqs
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_invalid_blank_line_after_header
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_invalid_blank_sequence
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_invalid_legacy_format
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_invalid_missing_header
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    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header
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    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults
    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/fastq_writer_sanger_defaults
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    • /usr/lib/python2.7/dist-packages/skbio/io/format/tests/data/genbank_5_blanks_start_of_file
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    • /usr/lib/python2.7/dist-packages/skbio/stats/ordination/tests/data/example2_X
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    • /usr/lib/python2.7/dist-packages/skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan
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    • /usr/lib/python2.7/dist-packages/skbio/stats/ordination/tests/data/example3_X
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    • /usr/share/doc/python-skbio/changelog.Debian.gz
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    Changelog

    2015-12-21 - Kevin Murray <spam@kdmurray.id.au> python-skbio (0.4.1-1) unstable; urgency=medium [ Kevin Murray ] * New upstream version * Build documentation and create new python-skbio-doc package (Closes: #806594) [ Andreas Tille ] * Do not require lots of dependencies on local machine just to run clean target

    2015-10-13 - Kevin Murray <spam@kdmurray.id.au> python-skbio (0.4.0-3) unstable; urgency=low [ Kevin Murray ] * Revert deletion of CI files in d/rules clean target * Add lintian overrides for duplicated compressed files * Fix my email address in d/control

    2015-10-13 - Scott Kitterman <scott@kitterman.com> python-skbio (0.4.0-2) unstable; urgency=medium * Update python related build-depends so python3-skbio is built for all supported python3 versions to ease transitions. (Closes: #801658)

    2015-08-03 - Andreas Tille <tille@debian.org> python-skbio (0.4.0-1) unstable; urgency=medium * Initial upload to Debian (Closes: #794021) * Add Kevin Murray <kevin@kdmurray.id.au> to uploaders

    2015-02-23 - Tim Booth <tbooth@ceh.ac.uk> skbio (0.2.3-0biolinux2) trusty; urgency=medium * Initial release for QIIME 1.9.0 * Note that this build does include compiled code and so must be arch=any

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