python-shogun_3.2.0-5.2_amd64.deb


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Description

python-shogun - Large Scale Machine Learning Toolbox

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-shogun
Package version: 3.2.0
Package release: 5.2
Package architecture: amd64
Package type: deb
Installed size: 17.99 KB
Download size: 2.44 MB
Official Mirror: archive.ubuntu.com
SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This package contains the static and the modular Python interfaces.

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Provides

  • python2.7-shogun

    Download

    Source package: python-shogun

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-shogun deb package:
      # sudo apt-get install python-shogun

    Files

    • /usr/lib/python2.7/dist-packages/_modshogun.so
    • /usr/lib/python2.7/dist-packages/modshogun.py
    • /usr/lib/python2.7/dist-packages/shogun/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Classifier/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Clustering/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Converter/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Distance/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Distribution/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Evaluation/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Features/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/IO/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Kernel/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Latent/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Library/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Loss/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Mathematics/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/ModelSelection/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Preprocessor/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Regression/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Statistics/__init__.py
    • /usr/lib/python2.7/dist-packages/shogun/Structure/__init__.py
    • /usr/share/doc/python-shogun/changelog.Debian.gz
    • /usr/share/doc/python-shogun/copyright
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/template.ipynb
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/classification/HashedDocDotFeatures.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/classification/SupportVectorMachines.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/clustering/GMM.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/clustering/KMeans.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/converter/Tapkee.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/evaluation/xval_modelselection.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/gaussian_process/gaussian_processes.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/ica/bss_audio.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/ica/bss_image.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/ica/ecg_sep.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/logdet/logdet.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/metric/LMNN.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/multiclass/KNN.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/multiclass/multiclass_reduction.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/multiclass/naive_bayes.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/statistics/mmd_two_sample_testing.ipynb.gz
    • /usr/share/doc/python-shogun/examples/ipython-notebooks/structure/FGM.ipynb.gz
    • /usr/share/doc/python-shogun/examples/python_modular/CMakeLists.txt
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_averaged_perceptron_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_custom_kernel_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_featureblock_logistic_regression.p
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_gaussiannaivebayes_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_gmnpsvm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_gpbtsvm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_knn_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_larank_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_lda_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_liblinear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_libsvm_minimal_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_libsvm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_libsvmoneclass_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_mpdsvm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclass_ecoc.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclass_ecoc_discriminant.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclass_ecoc_ovr.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclass_ecoc_random.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclass_relaxedtree.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclass_shareboost.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclassliblinear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclasslibsvm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclasslinearmachine_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclasslogisticregression_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclassmachine_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclassmultipleoutputliblinear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_multiclassocas_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_perceptron_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_qda_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_ssk_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_svmlin_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_svmocas_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/classifier_svmsgd_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/clustering_hierarchical_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/clustering_kmeans_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_diffusionmaps_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_factoranalysis_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_hasheddoc_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_hessianlocallylinearembedding_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_isomap_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_kernellocallylinearembedding_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_laplacianeigenmaps_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_linearlocaltangentspacealignment_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_localitypreservingprojections_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_locallylinearembedding_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_localtangentspacealignment_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_multidimensionalscaling_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_stochasticproximityembedding_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/converter_tdistributedstochasticneighborembedding_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_braycurtis_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_canberra_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_canberraword_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_chebyshew_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_chisquare_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_cosine_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_director_euclidean_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_euclidean_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_geodesic_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_hammingword_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_jensen_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_mahalanobis_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_manhatten_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_manhattenword_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_minkowski_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_normsquared_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_sparseeuclidean_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distance_tanimoto_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distribution_histogram_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distribution_hmm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distribution_linearhmm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/distribution_ppwm_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_clustering.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_clustering_simple.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_contingencytableevaluation_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_cross_validation_classification.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_cross_validation_mkl_weight_storage.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_cross_validation_multiclass_storage.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_cross_validation_regression.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_director_contingencytableevaluation_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_meansquarederror_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_meansquaredlogerror_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_multiclassaccuracy_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_multiclassovrevaluation_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_prcevaluation_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_rocevaluation_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/evaluation_thresholds_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_binned_dot_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_dense_byte_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_dense_io_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_dense_longint_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_dense_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_dense_protocols_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_dense_real_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_dense_zero_copy_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_director_dot_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_hasheddocdot_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_io_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_snp_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_sparse_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_char_compressed_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_char_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_file_char_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_file_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_hashed_wd_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_sliding_window_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_ulong_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/features_string_word_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_anova_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_auc_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_cauchy_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_chi2_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_circular_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_combined_custom_poly_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_combined_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_comm_ulong_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_comm_word_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_const_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_custom_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_diag_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_director_linear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_distance_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_distantsegments_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_exponential_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_fisher_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_fixed_degree_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_gaussian_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_gaussian_shift_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_histogram_word_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_inversemultiquadric_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_io_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_linear_byte_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_linear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_linear_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_linear_word_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_local_alignment_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_locality_improved_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_log_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_match_word_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_multiquadric_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_oligo_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_poly_match_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_poly_match_word_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_poly_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_power_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_rationalquadratic_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_salzberg_word_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_sigmoid_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_simple_locality_improved_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_sparse_gaussian_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_sparse_linear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_sparse_poly_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_spherical_modular.py
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    • /usr/share/doc/python-shogun/examples/python_modular/kernel_weighted_comm_word_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_weighted_degree_position_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/kernel_weighted_degree_string_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/labels_io_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/library_fisher2x3_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/library_time.py
    • /usr/share/doc/python-shogun/examples/python_modular/mathematics_linsolver_cg.py
    • /usr/share/doc/python-shogun/examples/python_modular/mathematics_logdet.py
    • /usr/share/doc/python-shogun/examples/python_modular/mathematics_sparseinversecovariance_modular.p
    • /usr/share/doc/python-shogun/examples/python_modular/metric_lmnn_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/mkl_binclass_modular.py
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    • /usr/share/doc/python-shogun/examples/python_modular/modelselection_grid_search_kernel.py.gz
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    • /usr/share/doc/python-shogun/examples/python_modular/modelselection_grid_search_liblinear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/modelselection_grid_search_libsvr_modular.py.gz
    • /usr/share/doc/python-shogun/examples/python_modular/modelselection_parameter_tree_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/modelselection_random_search_liblinear_modular.py
    • /usr/share/doc/python-shogun/examples/python_modular/preprocessor_dimensionreductionpreprocessor_modular.py
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    Changelog

    2014-10-20 - Anibal Monsalve Salazar <anibal@debian.org> python-shogun (3.2.0-5.2) unstable; urgency=medium * Non-maintainer upload. * Build-depend on clang (not clang-3.4) on [mips mipsel powerpc]. Patch by Dejan Latinovic <Dejan.Latinovic@imgtec.com>. Closes: #766022.

    2014-09-17 - Aurelien Jarno <aurel32@debian.org> python-shogun (3.2.0-5.1) unstable; urgency=medium * Non-maintainer upload. * Build depend on libjson-c-dev instead of libjson-c2-dev (Closes: #745012, #758010).

    2014-07-08 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.2.0-5) unstable; urgency=low * Build depend on libjson-c2-dev instead of libjson-c-dev (Closes: #745012)

    2014-07-08 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.2.0-4) unstable; urgency=low * Build depend on libarpack,libcolpack and use the same sse disable tactics for i386 archs as for the shogun package.

    2014-07-05 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.2.0-3) unstable; urgency=low * Build depend on libjson-c-dev instead of libjson0-dev (Closes: #745012) * Add build-dependency on colpack.

    2014-07-05 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.2.0-2) unstable; urgency=low * Require swig version >= 3.0

    2014-02-28 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.2.0-1) unstable; urgency=low * New upstream version * Update watch file * Require new libshogun version to build

    2014-02-28 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.1.1-7) unstable; urgency=low * fix typo clang3.4 -> clang-3.4

    2014-02-28 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.1.1-6) unstable; urgency=low * Use clang 3.4 instead of (non-available) clang 3.5.

    2014-02-23 - Soeren Sonnenburg <sonne@debian.org> python-shogun (3.1.1-5) unstable; urgency=low * Use clang to build on mips, mipsel, powerpc

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