python-screed_0.9-2_all.deb


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Description

python-screed - short nucleotide read sequence utils in Python 2

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-screed
Package version: 0.9
Package release: 2
Package architecture: all
Package type: deb
Installed size: 222 B
Download size: 67.65 KB
Official Mirror: archive.ubuntu.com
Screed parses FASTA and FASTQ files, generates databases, and lets you query these databases. Values such as sequence name, sequence description, sequence quality, and the sequence itself can be retrieved from these databases. This is the Python 2 version.

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    Source package: python-screed

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-screed deb package:
      # sudo apt-get install python-screed

    Files

    • /usr/lib/python2.7/dist-packages/screed/DBConstants.py
    • /usr/lib/python2.7/dist-packages/screed/__init__.py
    • /usr/lib/python2.7/dist-packages/screed/_version.py
    • /usr/lib/python2.7/dist-packages/screed/conversion.py
    • /usr/lib/python2.7/dist-packages/screed/createscreed.py
    • /usr/lib/python2.7/dist-packages/screed/dna.py
    • /usr/lib/python2.7/dist-packages/screed/dump_to_fasta.py
    • /usr/lib/python2.7/dist-packages/screed/dump_to_fastq.py
    • /usr/lib/python2.7/dist-packages/screed/fadbm.py
    • /usr/lib/python2.7/dist-packages/screed/fasta.py
    • /usr/lib/python2.7/dist-packages/screed/fastq.py
    • /usr/lib/python2.7/dist-packages/screed/fqdbm.py
    • /usr/lib/python2.7/dist-packages/screed/hava.py
    • /usr/lib/python2.7/dist-packages/screed/openscreed.py
    • /usr/lib/python2.7/dist-packages/screed/pygr_api.py
    • /usr/lib/python2.7/dist-packages/screed/screedRecord.py
    • /usr/lib/python2.7/dist-packages/screed/seqparse.py
    • /usr/lib/python2.7/dist-packages/screed/utils.py
    • /usr/lib/python2.7/dist-packages/screed-0.9.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/screed-0.9.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/screed-0.9.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/screed-0.9.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/screed/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/screed/tests/__main__.py
    • /usr/lib/python2.7/dist-packages/screed/tests/havaGen.py
    • /usr/lib/python2.7/dist-packages/screed/tests/screed_tst_utils.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_convert.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_dictionary.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_dna.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_fasta.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_fasta_recover.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_fastq.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_fastq_recover.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_hava_methods.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_nodb.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_open.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_open_cm.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_pygr_api.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_shell.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test_streaming.py
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/empty.fa
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test-whitespace.fa
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa.bz2
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa.gz
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa.zip
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fastq
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fastq.bz2
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fastq.gz
    • /usr/lib/python2.7/dist-packages/screed/tests/test-data/test.hava
    • /usr/share/doc/python-screed/README.test
    • /usr/share/doc/python-screed/changelog.Debian.gz
    • /usr/share/doc/python-screed/copyright
    • /usr/share/doc/python-screed/run-unit-test
    • /usr/share/lintian/overrides/python-screed

    Changelog

    2015-08-21 - Michael R. Crusoe <crusoe@ucdavis.edu> python-screed (0.9-2) unstable; urgency=medium * Fix autopkgtest testing.

    2015-05-27 - Michael R. Crusoe <crusoe@ucdavis.edu> python-screed (0.9-1) unstable; urgency=medium * Update to latest screed

    2015-05-27 - Michael R. Crusoe <mcrusoe@msu.edu> python-screed (0.7.1-2) unstable; urgency=medium * Initial upload to Debian (Closes: #776678)

    2014-09-25 - Michael R. Crusoe <michael.crusoe@gmail.com> python-screed (0.7.1-1ubuntu1) trusty; urgency=medium * Initial Release.

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