python-screed_0.9-2_all.deb


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Description

python-screed - short nucleotide read sequence utils in Python 2

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-screed
Package version 0.9
Package release 2
Package architecture all
Package type deb
Installed size 222 B
Download size 67.65 KB
Official Mirror archive.ubuntu.com
Screed parses FASTA and FASTQ files, generates databases, and lets you query
these databases. Values such as sequence name, sequence description, sequence
quality, and the sequence itself can be retrieved from these databases.
This is the Python 2 version.

Alternatives

Package Version Architecture Repository
python-screed_0.9-2_all.deb 0.9 all Ubuntu Universe
python-screed - - -

Requires

Name Value
python-bz2file -
python:any >= 2.7.5-5~
python:any << 2.8

Download

Type URL
Binary Package python-screed_0.9-2_all.deb
Source Package python-screed

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-screed deb package:
    # sudo apt-get install python-screed

Files

Path
/usr/lib/python2.7/dist-packages/screed/DBConstants.py
/usr/lib/python2.7/dist-packages/screed/__init__.py
/usr/lib/python2.7/dist-packages/screed/_version.py
/usr/lib/python2.7/dist-packages/screed/conversion.py
/usr/lib/python2.7/dist-packages/screed/createscreed.py
/usr/lib/python2.7/dist-packages/screed/dna.py
/usr/lib/python2.7/dist-packages/screed/dump_to_fasta.py
/usr/lib/python2.7/dist-packages/screed/dump_to_fastq.py
/usr/lib/python2.7/dist-packages/screed/fadbm.py
/usr/lib/python2.7/dist-packages/screed/fasta.py
/usr/lib/python2.7/dist-packages/screed/fastq.py
/usr/lib/python2.7/dist-packages/screed/fqdbm.py
/usr/lib/python2.7/dist-packages/screed/hava.py
/usr/lib/python2.7/dist-packages/screed/openscreed.py
/usr/lib/python2.7/dist-packages/screed/pygr_api.py
/usr/lib/python2.7/dist-packages/screed/screedRecord.py
/usr/lib/python2.7/dist-packages/screed/seqparse.py
/usr/lib/python2.7/dist-packages/screed/utils.py
/usr/lib/python2.7/dist-packages/screed-0.9.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/screed-0.9.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/screed-0.9.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/screed-0.9.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/screed/tests/__init__.py
/usr/lib/python2.7/dist-packages/screed/tests/__main__.py
/usr/lib/python2.7/dist-packages/screed/tests/havaGen.py
/usr/lib/python2.7/dist-packages/screed/tests/screed_tst_utils.py
/usr/lib/python2.7/dist-packages/screed/tests/test_convert.py
/usr/lib/python2.7/dist-packages/screed/tests/test_dictionary.py
/usr/lib/python2.7/dist-packages/screed/tests/test_dna.py
/usr/lib/python2.7/dist-packages/screed/tests/test_fasta.py
/usr/lib/python2.7/dist-packages/screed/tests/test_fasta_recover.py
/usr/lib/python2.7/dist-packages/screed/tests/test_fastq.py
/usr/lib/python2.7/dist-packages/screed/tests/test_fastq_recover.py
/usr/lib/python2.7/dist-packages/screed/tests/test_hava_methods.py
/usr/lib/python2.7/dist-packages/screed/tests/test_nodb.py
/usr/lib/python2.7/dist-packages/screed/tests/test_open.py
/usr/lib/python2.7/dist-packages/screed/tests/test_open_cm.py
/usr/lib/python2.7/dist-packages/screed/tests/test_pygr_api.py
/usr/lib/python2.7/dist-packages/screed/tests/test_shell.py
/usr/lib/python2.7/dist-packages/screed/tests/test_streaming.py
/usr/lib/python2.7/dist-packages/screed/tests/test-data/empty.fa
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test-whitespace.fa
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa.bz2
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa.gz
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fa.zip
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fastq
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fastq.bz2
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.fastq.gz
/usr/lib/python2.7/dist-packages/screed/tests/test-data/test.hava
/usr/share/doc/python-screed/README.test
/usr/share/doc/python-screed/changelog.Debian.gz
/usr/share/doc/python-screed/copyright
/usr/share/doc/python-screed/run-unit-test
/usr/share/lintian/overrides/python-screed

Changelog

2015-08-21 - Michael R. Crusoe <crusoe@ucdavis.edu>
python-screed (0.9-2) unstable; urgency=medium
* Fix autopkgtest testing.
2015-05-27 - Michael R. Crusoe <crusoe@ucdavis.edu>
python-screed (0.9-1) unstable; urgency=medium
* Update to latest screed
2015-05-27 - Michael R. Crusoe <mcrusoe@msu.edu>
python-screed (0.7.1-2) unstable; urgency=medium
* Initial upload to Debian (Closes: #776678)
2014-09-25 - Michael R. Crusoe <michael.crusoe@gmail.com>
python-screed (0.7.1-1ubuntu1) trusty; urgency=medium
* Initial Release.

See Also

Package Description
python-scripttest_1.3-2_all.deb Helper to test command-line scripts - python 2.x
python-scriptutil_1-2_all.deb Python module which provides the functionality of find and grep
python-scrypt_0.6.1-5.1_amd64.deb Python bindings for the scrypt key derivation function library
python-sdl2_0.9.3+dfsg2-1_all.deb Python bindings to the SDL2 C-library (Python 2 build)
python-seaborn_0.6.0-1_all.deb statistical visualization library
python-seamicroclient_0.4.0-1ubuntu1_all.deb Client library for Seamicro chassis API - Python 2.x
python-securepass_0.4.3-1_all.deb Python module to access SecurePass
python-seelablet_0.1.9-2_all.deb python library for SEELablet
python-selenium_2.48.0+dfsg1-2_all.deb Python bindings for Selenium
python-selinux_2.4-3build2_amd64.deb Python bindings to SELinux shared libraries
python-semanage_2.3-1build3_amd64.deb Python bindings for SELinux policy management
python-semver_2.0.1-1_all.deb helps to compare semantic versioning - Python 2.x
python-sendfile_2.0.1-1build1_amd64.deb Python interface to sendfile(2)
python-senlin_1.0.0-1_all.deb clustering service for OpenStack clouds - Python 2.7
python-sensor-msgs_1.12.3-5_all.deb Messages relating to Robot OS sensor, Python interface
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