python-pyvcf_0.6.7-2build1_amd64.deb


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Description

python-pyvcf - Variant Call Format (VCF) parser for Python

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-pyvcf
Package version: 0.6.7
Package release: 2build1
Package architecture: amd64
Package type: deb
Installed size: 140 B
Download size: 35.10 KB
Official Mirror: archive.ubuntu.com
The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project. The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings. This package provides the Python 2 modules.

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    Source package: python-pyvcf

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-pyvcf deb package:
      # sudo apt-get install python-pyvcf

    Files

    • /usr/lib/python2.7/dist-packages/PyVCF-0.6.7.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/PyVCF-0.6.7.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/PyVCF-0.6.7.egg-info/entry_points.txt
    • /usr/lib/python2.7/dist-packages/PyVCF-0.6.7.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/PyVCF-0.6.7.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/vcf/__init__.py
    • /usr/lib/python2.7/dist-packages/vcf/cparse.pyx
    • /usr/lib/python2.7/dist-packages/vcf/cparse.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/vcf/filters.py
    • /usr/lib/python2.7/dist-packages/vcf/model.py
    • /usr/lib/python2.7/dist-packages/vcf/parser.py
    • /usr/lib/python2.7/dist-packages/vcf/utils.py
    • /usr/share/doc/python-pyvcf/changelog.Debian.gz
    • /usr/share/doc/python-pyvcf/copyright

    Changelog

    2016-01-19 - Matthias Klose <doko@ubuntu.com> python-pyvcf (0.6.7-2build1) xenial; urgency=medium * No-change rebuild to drop python3.4 support.

    2015-12-31 - Andreas Tille <tille@debian.org> python-pyvcf (0.6.7-2) unstable; urgency=medium [ Scott Kitterman ] * Change python3-dev build-dep to python3-all-dev so package is built for all supported python3 versions Closes: #809487

    2015-10-14 - Andreas Tille <tille@debian.org> python-pyvcf (0.6.7-1) unstable; urgency=medium * Initial upload (Closes: #801722)

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