python-pyvcf-examples_0.6.7-2build1_all.deb


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Description

python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-pyvcf-examples
Package version 0.6.7
Package release 2build1
Package architecture all
Package type deb
Installed size 965 B
Download size 909.48 KB
Official Mirror archive.ubuntu.com
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
This package provides example data to test the Python modules.

Alternatives

Package Version Architecture Repository
python-pyvcf-examples_0.6.7-2build1_all.deb 0.6.7 all Ubuntu Universe
python-pyvcf-examples - - -

Download

Type URL
Binary Package python-pyvcf-examples_0.6.7-2build1_all.deb
Source Package python-pyvcf

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pyvcf-examples deb package:
    # sudo apt-get install python-pyvcf-examples

Files

Path
/usr/share/doc/python-pyvcf-examples/changelog.Debian.gz
/usr/share/doc/python-pyvcf-examples/copyright
/usr/share/doc/python-pyvcf-examples/test/1kg.sites.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/1kg.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/__init__.py
/usr/share/doc/python-pyvcf-examples/test/bcftools.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/contig_idonly.vcf
/usr/share/doc/python-pyvcf-examples/test/example-4.0.vcf
/usr/share/doc/python-pyvcf-examples/test/example-4.1-bnd.vcf
/usr/share/doc/python-pyvcf-examples/test/example-4.1-info-multiple-values.vcf
/usr/share/doc/python-pyvcf-examples/test/example-4.1-ploidy.vcf
/usr/share/doc/python-pyvcf-examples/test/example-4.1-sv.vcf
/usr/share/doc/python-pyvcf-examples/test/example-4.1.vcf
/usr/share/doc/python-pyvcf-examples/test/example-4.2.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/freebayes.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/gatk.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/gatk_26_meta.vcf
/usr/share/doc/python-pyvcf-examples/test/gonl.chr20.release4.gtc.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/info-type-character.vcf
/usr/share/doc/python-pyvcf-examples/test/issue-140-file1.vcf
/usr/share/doc/python-pyvcf-examples/test/issue-140-file2.vcf
/usr/share/doc/python-pyvcf-examples/test/issue-140-file3.vcf
/usr/share/doc/python-pyvcf-examples/test/issue-16.vcf
/usr/share/doc/python-pyvcf-examples/test/issue-201.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/issue-201.vcf.gz.tbi
/usr/share/doc/python-pyvcf-examples/test/issue_49.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/metadata-whitespace.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/mixed-filtering.vcf
/usr/share/doc/python-pyvcf-examples/test/null_genotype_mono.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/parse-meta-line.vcf
/usr/share/doc/python-pyvcf-examples/test/prof.py
/usr/share/doc/python-pyvcf-examples/test/samples-space.vcf
/usr/share/doc/python-pyvcf-examples/test/samtools.vcf
/usr/share/doc/python-pyvcf-examples/test/string_as_flag.vcf
/usr/share/doc/python-pyvcf-examples/test/tb.vcf.gz
/usr/share/doc/python-pyvcf-examples/test/tb.vcf.gz.tbi
/usr/share/doc/python-pyvcf-examples/test/test_vcf.py.gz
/usr/share/doc/python-pyvcf-examples/test/uncalled_genotypes.vcf
/usr/share/doc/python-pyvcf-examples/test/walk_left.vcf
/usr/share/doc/python-pyvcf-examples/test/walk_refcall.vcf
/usr/share/lintian/overrides/python-pyvcf-examples

Changelog

See python-pyvcf_0.6.7-2build1_amd64.deb changelog.

See Also

Package Description
python-pyvcf_0.6.7-2build1_amd64.deb Variant Call Format (VCF) parser for Python
python-pyviennacl_1.0.2+dfsg-1build3_amd64.deb Python bindings for ViennaCL linear algebra library (for Python 2)
python-pyvisa-py_0.2-1_all.deb Backend that implements a large part of the VISA in pure Python
python-pyvisa_1.8-2_all.deb Python bindings for Virtual Instrument Software Architecture
python-pyvmomi_5.5.0-2014.1.1-3_all.deb VMware vSphere Python SDK - Python 2.x
python-pyvorbis_1.5-4_amd64.deb Python interface to the Ogg Vorbis library
python-pyvows_2.0.6-2_all.deb Asynchronous BDD for Python
python-pyvtk_0.4.74-3.1_all.deb module for manipulating VTK files
python-pywapi_0.3.6-1_all.deb Python wrapper around different weather APIs
python-pywbem_0.8.0~dev650-1_all.deb Python WBEM Client and Provider Interface
python-pywcs_1.12-7_amd64.deb Set of routines for handling the FITS WCS standard
python-pywt-doc_0.3.0-1build1_all.deb Python extension implementing of wavelet transformations (Documentation)
python-pywt_0.3.0-1build1_amd64.deb Python extension implementing of wavelet transformations
python-pyx-doc_0.12.1-4_all.deb Python 2 module for generating PostScript graphics (documentation)
python-pyx_0.12.1-4_amd64.deb Python 2 module for generating PostScript graphics
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