python-pysam_0.7.7-1ubuntu1_amd64.deb


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Description

python-pysam - interface for the SAM/BAM sequence alignment and mapping format

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-pysam
Package version: 0.7.7
Package release: 1ubuntu1
Package architecture: amd64
Package type: deb
Installed size: 2.23 KB
Download size: 631.92 KB
Official Mirror: archive.ubuntu.com
Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API.

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    Download

    Source package: python-pysam

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-pysam deb package:
      # sudo apt-get install python-pysam

    Files

    • /usr/lib/python2.7/dist-packages/pysam/Pileup.py
    • /usr/lib/python2.7/dist-packages/pysam/TabProxies.pxd
    • /usr/lib/python2.7/dist-packages/pysam/TabProxies.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/pysam/__init__.py
    • /usr/lib/python2.7/dist-packages/pysam/csamtools.pxd
    • /usr/lib/python2.7/dist-packages/pysam/csamtools.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/pysam/ctabix.pxd
    • /usr/lib/python2.7/dist-packages/pysam/ctabix.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/pysam/cvcf.pxd
    • /usr/lib/python2.7/dist-packages/pysam/cvcf.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/pysam/namedtuple.py
    • /usr/lib/python2.7/dist-packages/pysam/pysam_util.h
    • /usr/lib/python2.7/dist-packages/pysam/tabix_util.h
    • /usr/lib/python2.7/dist-packages/pysam/version.py
    • /usr/lib/python2.7/dist-packages/pysam-0.7.7.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/pysam-0.7.7.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/pysam-0.7.7.egg-info/not-zip-safe
    • /usr/lib/python2.7/dist-packages/pysam-0.7.7.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/pysam-0.7.7.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/pysam/include/__init__.py
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/__init__.py
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bam.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bam2bcf.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bam_endian.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bam_tview.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bgzf.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/errmod.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/faidx.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/kaln.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/khash.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/klist.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/knetfile.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/kprobaln.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/kseq.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/ksort.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/kstring.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/pysam.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/razf.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/sam.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/sam_header.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/sample.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bcftools/__init__.py
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bcftools/bcf.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bcftools/kmin.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/bcftools/prob1.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/win32/__init__.py
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/win32/xcurses.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/win32/zconf.h
    • /usr/lib/python2.7/dist-packages/pysam/include/samtools/win32/zlib.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/__init__.py
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/bam_endian.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/bgzf.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/khash.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/knetfile.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/kseq.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/ksort.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/kstring.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/pysam.h
    • /usr/lib/python2.7/dist-packages/pysam/include/tabix/tabix.h
    • /usr/share/doc/python-pysam/changelog.Debian.gz
    • /usr/share/doc/python-pysam/copyright

    Changelog

    2014-09-11 - Matthias Klose <doko@ubuntu.com> python-pysam (0.7.7-1ubuntu1) utopic; urgency=medium * Apply alignment and endian patches. Closes: #753490.

    2014-04-19 - Charles Plessy <plessy@debian.org> python-pysam (0.7.7-1) unstable; urgency=medium * New upstream releases. * Upstream source code moved to GitHub. * Watch the Python Package Index since there are no relevant tags on GitHub. * Added a git-buildpackage configuration file to mark its usage. * Build-depend samtools (>= 0.1.19); this is needed for the regression tests in Wheezy. * debian/patches/offline-tests.patch: correction from a later release.

    2014-03-19 - Andreas Tille <tille@debian.org> python-pysam (0.7.5-5) unstable; urgency=medium * Add make to autopkgtest dependencies Closes: #741274

    2014-03-11 - Andreas Tille <tille@debian.org> python-pysam (0.7.5-4) unstable; urgency=medium * Fix autotest Closes: #741274

    2014-03-01 - Andreas Tille <tille@debian.org> python-pysam (0.7.5-3) unstable; urgency=medium * Do not install tests in world writable dir Closes: #739575

    2014-02-20 - Andreas Tille <tille@debian.org> python-pysam (0.7.5-2) unstable; urgency=medium * debian/rules: Set PYTHONPATH correctly using dh_python (thanks to Piotr O┼╝arowski <piotr@debian.org> for the patch) Closes: #739631

    2014-02-07 - Andreas Tille <tille@debian.org> python-pysam (0.7.5-1) unstable; urgency=low * Initial release (Closes: #738665)

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