python-pyfaidx_0.4.5.2-1_all.deb


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Description

python-pyfaidx - efficient random access to fasta subsequences for Python

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-pyfaidx
Package version 0.4.5.2
Package release 1
Package architecture all
Package type deb
Installed size 86 B
Download size 18.17 KB
Official Mirror archive.ubuntu.com
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
This package provides the Python 2 modules to access fasta files.

Alternatives

Package Version Architecture Repository
python-pyfaidx_0.4.5.2-1_all.deb 0.4.5.2 all Ubuntu Universe
python-pyfaidx - - -

Requires

Name Value
python-six -
python:any >= 2.7.5-5~
python:any << 2.8

Download

Type URL
Binary Package python-pyfaidx_0.4.5.2-1_all.deb
Source Package python-pyfaidx

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pyfaidx deb package:
    # sudo apt-get install python-pyfaidx

Files

Path
/usr/lib/python2.7/dist-packages/pyfaidx/__init__.py
/usr/lib/python2.7/dist-packages/pyfaidx/cli.py
/usr/lib/python2.7/dist-packages/pyfaidx-0.4.5.2.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/pyfaidx-0.4.5.2.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/pyfaidx-0.4.5.2.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/pyfaidx-0.4.5.2.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/pyfaidx-0.4.5.2.egg-info/top_level.txt
/usr/share/doc/python-pyfaidx/changelog.Debian.gz
/usr/share/doc/python-pyfaidx/copyright

Changelog

2015-11-17 - Andreas Tille <tille@debian.org>
python-pyfaidx (0.4.5.2-1) unstable; urgency=medium
* Initial upload (Closes: #801721)

See Also

Package Description
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python-pygame-sdl2_6.99.8-3_amd64.deb reimplementation of the Pygame API using SDL2
python-pygame_1.9.1release+dfsg-10_amd64.deb SDL bindings for games development in Python
python-pygccxml_1.0.0-5_all.deb specialized XML reader reads the output from gccxml
python-pygeoif_0.6-1_all.deb basic implementation of the __geo_interface__
python-pygetdata_0.9.0-2.2_amd64.deb library to read/write dirfile data - python bindings
python-pyghmi_0.8.0-1_all.deb General Hardware Management Initiative (IPMI and others)
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