python-pyfaidx-examples_0.4.5.2-1_all.deb


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Description

python-pyfaidx-examples - example data for efficient random access to fasta subsequences for Python

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-pyfaidx-examples
Package version: 0.4.5.2
Package release: 1
Package architecture: all
Package type: deb
Installed size: 37 B
Download size: 21.64 KB
Official Mirror: archive.ubuntu.com
Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge. This package provides example data to test the Python modules.

Alternatives

    Download

    Source package: python-pyfaidx

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-pyfaidx-examples deb package:
      # sudo apt-get install python-pyfaidx-examples

    Files

    • /usr/share/doc/python-pyfaidx-examples/changelog.Debian.gz
    • /usr/share/doc/python-pyfaidx-examples/copyright
    • /usr/share/doc/python-pyfaidx-examples/examples/genes.fasta.gz
    • /usr/share/doc/python-pyfaidx-examples/examples/genes.fasta.lower.gz
    • /usr/share/doc/python-pyfaidx-examples/examples/malformed.bed
    • /usr/share/doc/python-pyfaidx-examples/examples/regions.bed

    Changelog

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