python-pyfaidx-examples - example data for efficient random access to fasta subsequences for Python

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-pyfaidx-examples
Package version
Package release 1
Package architecture all
Package type deb
Installed size 37 B
Download size 21.64 KB
Official Mirror
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
This package provides example data to test the Python modules.


Package Version Architecture Repository
python-pyfaidx-examples_0.4.5.2-1_all.deb all Ubuntu Universe
python-pyfaidx-examples - - -


Type URL
Binary Package python-pyfaidx-examples_0.4.5.2-1_all.deb
Source Package python-pyfaidx

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pyfaidx-examples deb package:
    # sudo apt-get install python-pyfaidx-examples




See python-pyfaidx_0.4.5.2-1_all.deb changelog.

See Also

Package Description
python-pyfaidx_0.4.5.2-1_all.deb efficient random access to fasta subsequences for Python
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