python-pyfaidx-examples_0.4.5.2-1_all.deb


Advertisement

Description

python-pyfaidx-examples - example data for efficient random access to fasta subsequences for Python

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-pyfaidx-examples
Package version 0.4.5.2
Package release 1
Package architecture all
Package type deb
Installed size 37 B
Download size 21.64 KB
Official Mirror archive.ubuntu.com
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
This package provides example data to test the Python modules.

Alternatives

Package Version Architecture Repository
python-pyfaidx-examples_0.4.5.2-1_all.deb 0.4.5.2 all Ubuntu Universe
python-pyfaidx-examples - - -

Download

Type URL
Binary Package python-pyfaidx-examples_0.4.5.2-1_all.deb
Source Package python-pyfaidx

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pyfaidx-examples deb package:
    # sudo apt-get install python-pyfaidx-examples

Files

Path
/usr/share/doc/python-pyfaidx-examples/changelog.Debian.gz
/usr/share/doc/python-pyfaidx-examples/copyright
/usr/share/doc/python-pyfaidx-examples/examples/genes.fasta.gz
/usr/share/doc/python-pyfaidx-examples/examples/genes.fasta.lower.gz
/usr/share/doc/python-pyfaidx-examples/examples/malformed.bed
/usr/share/doc/python-pyfaidx-examples/examples/regions.bed

Changelog

See python-pyfaidx_0.4.5.2-1_all.deb changelog.

See Also

Package Description
python-pyfaidx_0.4.5.2-1_all.deb efficient random access to fasta subsequences for Python
python-pyfann_1.0.7-4build1_amd64.deb deprecated Python bindings for FANN
python-pyfftw_0.10.1+dfsg1-1_amd64.deb Pythonic wrapper around FFTW - Python 2
python-pyfiglet_0.7.4+dfsg-2_all.deb Python port of the FIGlet specification
python-pyfits_3.4-1_amd64.deb Python module for reading, writing, and manipulating FITS files
python-pyflakes_1.1.0-2_all.deb passive checker of Python 2 programs
python-pyflot_0.2-1_all.deb interface from Python to libjs-flot
python-pyfribidi_0.11.0+repack-1_amd64.deb FriBidi Python bindings
python-pyftpdlib_1.4.0-1_all.deb Python FTP server library
python-pygal_2.0.12-2_all.deb Python svg graph plotting library
python-pygame-sdl2_6.99.8-3_amd64.deb reimplementation of the Pygame API using SDL2
python-pygame_1.9.1release+dfsg-10_amd64.deb SDL bindings for games development in Python
python-pygccxml_1.0.0-5_all.deb specialized XML reader reads the output from gccxml
python-pygeoif_0.6-1_all.deb basic implementation of the __geo_interface__
python-pygetdata_0.9.0-2.2_amd64.deb library to read/write dirfile data - python bindings
Advertisement
Advertisement