python-pbgenomicconsensus_2.0.0+20151210-1_all.deb


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Description

python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller (Python 2)

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-pbgenomicconsensus
Package version: 2.0.0+20151210
Package release: 1
Package architecture: all
Package type: deb
Installed size: 247 B
Download size: 38.66 KB
Official Mirror: archive.ubuntu.com
The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides. This package is part of the SMRTAnalysis suite and provides the Python 2 backend library.

    Download

    Source package: pbgenomicconsensus

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-pbgenomicconsensus deb package:
      # sudo apt-get install python-pbgenomicconsensus

    Files

    • /usr/lib/python2.7/dist-packages/GenomicConsensus/ResultCollector.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/Worker.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/__init__.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/consensus.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/main.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/options.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/reference.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/utils.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/variants.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/windows.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/not-zip-safe
    • /usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/io/VariantsGffWriter.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/io/__init__.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/io/utils.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/plurality/__init__.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/plurality/plurality.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/__init__.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/diploid.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/evidence.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/model.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/quiver.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/utils.py
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2014-03/GenomicConsensus/QuiverParameters.ini
    • /usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2014-09/GenomicConsensus/QuiverParameters.ini
    • /usr/share/doc/python-pbgenomicconsensus/NEWS.Debian.gz
    • /usr/share/doc/python-pbgenomicconsensus/changelog.Debian.gz
    • /usr/share/doc/python-pbgenomicconsensus/copyright
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