python-pbgenomicconsensus_2.0.0+20151210-1_all.deb


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Description

python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller (Python 2)

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-pbgenomicconsensus
Package version 2.0.0+20151210
Package release 1
Package architecture all
Package type deb
Installed size 247 B
Download size 38.66 KB
Official Mirror archive.ubuntu.com
The GenomicConsensus package provides Quiver, Pacific Biosciences'
flagship consensus and variant caller. Quiver is an algorithm that finds
the maximum likelihood template sequence given PacBio reads of the template.
These reads are modeled using a conditional random field approach that
prescribes a probability to a read given a template sequence. In addition to
the base sequence of each read, Quiver uses several additional quality value
covariates that the base caller provides.
This package is part of the SMRTAnalysis suite and provides the Python 2
backend library.

Alternatives

Package Version Architecture Repository
python-pbgenomicconsensus_2.0.0+20151210-1_all.deb 2.0.0+20151210 all Ubuntu Universe
python-pbgenomicconsensus - - -

Requires

Name Value
python-h5py -
python-numpy -
python-pbcommand -
python-pbconsensuscore -
python-pbcore -
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-pbgenomicconsensus_2.0.0+20151210-1_all.deb
Source Package pbgenomicconsensus

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pbgenomicconsensus deb package:
    # sudo apt-get install python-pbgenomicconsensus

Files

Path
/usr/lib/python2.7/dist-packages/GenomicConsensus/ResultCollector.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/Worker.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/__init__.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/consensus.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/main.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/options.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/reference.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/utils.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/variants.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/windows.py
/usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/not-zip-safe
/usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/GenomicConsensus-1.1.0.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/GenomicConsensus/io/VariantsGffWriter.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/io/__init__.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/io/utils.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/plurality/__init__.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/plurality/plurality.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/__init__.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/diploid.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/evidence.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/model.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/quiver.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/utils.py
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2014-03/GenomicConsensus/QuiverParameters.ini
/usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2014-09/GenomicConsensus/QuiverParameters.ini
/usr/share/doc/python-pbgenomicconsensus/NEWS.Debian.gz
/usr/share/doc/python-pbgenomicconsensus/changelog.Debian.gz
/usr/share/doc/python-pbgenomicconsensus/copyright

Changelog

See pbgenomicconsensus_2.0.0+20151210-1_all.deb changelog.

See Also

Package Description
python-pbh5tools-doc_0.8.0+dfsg-4_all.deb tools for manipulating HDF5 files produced by Pacific Biosciences (doc)
python-pbh5tools_0.8.0+dfsg-4_amd64.deb tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
python-pbkdf2_1.3+20110613.git2a0fb15~ds0-3_all.deb Python RSA PKCS#5 v2.0 module (Python 2)
python-pcapy_0.10.8-1build1_amd64.deb Python interface to the libpcap packet capture library
python-pcl-msgs_0.2.0-2_all.deb Python code for PCL-related Robot OS Messages
python-pcp_3.10.8build1_amd64.deb Performance Co-Pilot Python PMAPI module
python-pcs_0.6+debian-0ubuntu3_amd64.deb Packet Construction Set for Python
python-pdfminer_20140328+dfsg-1_all.deb PDF parser and analyser
python-pdfrw-doc_0.2-2_all.deb PDF file manipulation library (documentation)
python-pdfrw_0.2-2_all.deb PDF file manipulation library (Python 2)
python-pdftools_0.37-4_all.deb PDF document reading classes
python-peak.rules_0.5a1+r2713-1_all.deb generic functions support for Python
python-peak.util.decorators_1.8-3_all.deb version-agnostic decorators support for Python
python-peak.util_20160204-1_all.deb utilities from the Python Enterprise Application Kit
python-pebl-doc_1.0.2-3_all.deb Python Environment for Bayesian Learning - documentation
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