python-pbcommand_0.2.17-1_all.deb


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Description

python-pbcommand - common command-line interface for Pacific Biosciences analysis modules

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-pbcommand
Package version: 0.2.17
Package release: 1
Package architecture: all
Package type: deb
Installed size: 238 B
Download size: 46.31 KB
Official Mirror: archive.ubuntu.com
To integrate with the pbsmrtpipe workflow engine, one must to be able to generate a Tool Contract and to be able to run from a Resolved Tool Contract. A Tool Contract contains the metadata of the exe, such as the file types of inputs, outputs and options. There are two principal use cases, first wrapping/calling Python functions that have been defined in external Python packages, or scripts. Second, creating a CLI tool that supports emitting tool contracts, running resolved tool contracts and complete argparse-style CLI.

Alternatives

    Download

    Source package: python-pbcommand

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-pbcommand deb package:
      # sudo apt-get install python-pbcommand

    Files

    • /usr/lib/python2.7/dist-packages/pbcommand/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/common_options.py
    • /usr/lib/python2.7/dist-packages/pbcommand/interactive_resolver.py
    • /usr/lib/python2.7/dist-packages/pbcommand/resolver.py
    • /usr/lib/python2.7/dist-packages/pbcommand/utils.py
    • /usr/lib/python2.7/dist-packages/pbcommand/validators.py
    • /usr/lib/python2.7/dist-packages/pbcommand-0.2.17.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/pbcommand-0.2.17.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/pbcommand-0.2.17.egg-info/not-zip-safe
    • /usr/lib/python2.7/dist-packages/pbcommand-0.2.17.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/pbcommand-0.2.17.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/core.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/quick.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_app.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_gather_fasta_app.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_mixed_app.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_quick_hello_world.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_scatter_fasta_app.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_simple_app.py
    • /usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_txt_app.py
    • /usr/lib/python2.7/dist-packages/pbcommand/engine/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/engine/runner.py
    • /usr/lib/python2.7/dist-packages/pbcommand/models/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/models/common.py
    • /usr/lib/python2.7/dist-packages/pbcommand/models/parser.py
    • /usr/lib/python2.7/dist-packages/pbcommand/models/report.py
    • /usr/lib/python2.7/dist-packages/pbcommand/models/tool_contract.py
    • /usr/lib/python2.7/dist-packages/pbcommand/pb_io/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/pb_io/common.py
    • /usr/lib/python2.7/dist-packages/pbcommand/pb_io/report.py
    • /usr/lib/python2.7/dist-packages/pbcommand/pb_io/tool_contract_io.py
    • /usr/lib/python2.7/dist-packages/pbcommand/schemas/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/schemas/pbreport.avsc
    • /usr/lib/python2.7/dist-packages/pbcommand/schemas/resolved_tool_contract.avsc
    • /usr/lib/python2.7/dist-packages/pbcommand/schemas/tool_contract.avsc
    • /usr/lib/python2.7/dist-packages/pbcommand/testkit/__init__.py
    • /usr/lib/python2.7/dist-packages/pbcommand/testkit/base_utils.py
    • /usr/lib/python2.7/dist-packages/pbcommand/testkit/core.py
    • /usr/share/doc/python-pbcommand/README.md.gz
    • /usr/share/doc/python-pbcommand/changelog.Debian.gz
    • /usr/share/doc/python-pbcommand/commandline_interface.rst.gz
    • /usr/share/doc/python-pbcommand/copyright
    • /usr/share/doc/python-pbcommand/examples/example_01.py

    Changelog

    2015-11-27 - Afif Elghraoui <afif@ghraoui.name> python-pbcommand (0.2.17-1) unstable; urgency=low * Imported Upstream version 0.2.17

    2015-10-26 - Afif Elghraoui <afif@ghraoui.name> python-pbcommand (0.2.16-1) unstable; urgency=low * Initial release (Closes: #798872)

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