python-pbalign_0.2.0-1_all.deb


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Description

python-pbalign - map Pacific Biosciences reads to reference DNA sequences (Python2)

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-pbalign
Package version: 0.2.0
Package release: 1
Package architecture: all
Package type: deb
Installed size: 227 B
Download size: 33.46 KB
Official Mirror: archive.ubuntu.com
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.

Alternatives

    Download

    Source package: pbalign

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-pbalign deb package:
      # sudo apt-get install python-pbalign

    Files

    • /usr/lib/python2.7/dist-packages/pbalign/__init__.py
    • /usr/lib/python2.7/dist-packages/pbalign/filterservice.py
    • /usr/lib/python2.7/dist-packages/pbalign/options.py
    • /usr/lib/python2.7/dist-packages/pbalign/pbalignfiles.py
    • /usr/lib/python2.7/dist-packages/pbalign/pbalignrunner.py
    • /usr/lib/python2.7/dist-packages/pbalign/service.py
    • /usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/entry_points.txt
    • /usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/not-zip-safe
    • /usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/pbalign/alignservice/__init__.py
    • /usr/lib/python2.7/dist-packages/pbalign/alignservice/align.py
    • /usr/lib/python2.7/dist-packages/pbalign/alignservice/blasr.py
    • /usr/lib/python2.7/dist-packages/pbalign/alignservice/bowtie.py
    • /usr/lib/python2.7/dist-packages/pbalign/alignservice/fastabasedalign.py
    • /usr/lib/python2.7/dist-packages/pbalign/alignservice/gmap.py
    • /usr/lib/python2.7/dist-packages/pbalign/forquiverservice/__init__.py
    • /usr/lib/python2.7/dist-packages/pbalign/forquiverservice/forquiver.py
    • /usr/lib/python2.7/dist-packages/pbalign/forquiverservice/loadchemistry.py
    • /usr/lib/python2.7/dist-packages/pbalign/forquiverservice/loadpulses.py
    • /usr/lib/python2.7/dist-packages/pbalign/forquiverservice/repack.py
    • /usr/lib/python2.7/dist-packages/pbalign/forquiverservice/sort.py
    • /usr/lib/python2.7/dist-packages/pbalign/tools/__init__.py
    • /usr/lib/python2.7/dist-packages/pbalign/tools/createChemistryHeader.py
    • /usr/lib/python2.7/dist-packages/pbalign/tools/extractUnmappedSubreads.py
    • /usr/lib/python2.7/dist-packages/pbalign/tools/loadChemistry.py
    • /usr/lib/python2.7/dist-packages/pbalign/tools/mask_aligned_reads.py
    • /usr/lib/python2.7/dist-packages/pbalign/utils/RgnH5IO.py
    • /usr/lib/python2.7/dist-packages/pbalign/utils/__init__.py
    • /usr/lib/python2.7/dist-packages/pbalign/utils/fileutil.py
    • /usr/lib/python2.7/dist-packages/pbalign/utils/progutil.py
    • /usr/lib/python2.7/dist-packages/pbalign/utils/tempfileutil.py
    • /usr/share/doc/python-pbalign/changelog.Debian.gz
    • /usr/share/doc/python-pbalign/copyright

    Changelog

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