python-pbalign_0.2.0-1_all.deb


Advertisement

Description

python-pbalign - map Pacific Biosciences reads to reference DNA sequences (Python2)

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-pbalign
Package version 0.2.0
Package release 1
Package architecture all
Package type deb
Installed size 227 B
Download size 33.46 KB
Official Mirror archive.ubuntu.com
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
pbalign is part of the SMRTAnalysis suite. This package provides the
Python library backend.

Alternatives

Package Version Architecture Repository
python-pbalign_0.2.0-1_all.deb 0.2.0 all Ubuntu Universe
python-pbalign - - -

Requires

Name Value
blasr -
python-pbcore -
python-pysam -
python:any >= 2.7.5-5~
python:any << 2.8

Download

Type URL
Binary Package python-pbalign_0.2.0-1_all.deb
Source Package pbalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pbalign deb package:
    # sudo apt-get install python-pbalign

Files

Path
/usr/lib/python2.7/dist-packages/pbalign/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/filterservice.py
/usr/lib/python2.7/dist-packages/pbalign/options.py
/usr/lib/python2.7/dist-packages/pbalign/pbalignfiles.py
/usr/lib/python2.7/dist-packages/pbalign/pbalignrunner.py
/usr/lib/python2.7/dist-packages/pbalign/service.py
/usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/not-zip-safe
/usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/pbalign-0.2.0.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/pbalign/alignservice/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/align.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/blasr.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/bowtie.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/fastabasedalign.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/gmap.py
/usr/lib/python2.7/dist-packages/pbalign/forquiverservice/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/forquiverservice/forquiver.py
/usr/lib/python2.7/dist-packages/pbalign/forquiverservice/loadchemistry.py
/usr/lib/python2.7/dist-packages/pbalign/forquiverservice/loadpulses.py
/usr/lib/python2.7/dist-packages/pbalign/forquiverservice/repack.py
/usr/lib/python2.7/dist-packages/pbalign/forquiverservice/sort.py
/usr/lib/python2.7/dist-packages/pbalign/tools/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/tools/createChemistryHeader.py
/usr/lib/python2.7/dist-packages/pbalign/tools/extractUnmappedSubreads.py
/usr/lib/python2.7/dist-packages/pbalign/tools/loadChemistry.py
/usr/lib/python2.7/dist-packages/pbalign/tools/mask_aligned_reads.py
/usr/lib/python2.7/dist-packages/pbalign/utils/RgnH5IO.py
/usr/lib/python2.7/dist-packages/pbalign/utils/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/utils/fileutil.py
/usr/lib/python2.7/dist-packages/pbalign/utils/progutil.py
/usr/lib/python2.7/dist-packages/pbalign/utils/tempfileutil.py
/usr/share/doc/python-pbalign/changelog.Debian.gz
/usr/share/doc/python-pbalign/copyright

Changelog

See pbalign_0.2.0-1_all.deb changelog.

See Also

Package Description
python-pbcommand_0.2.17-1_all.deb common command-line interface for Pacific Biosciences analysis modules
python-pbconsensuscore_1.0.1-1build1_amd64.deb algorithms for Pacific Biosciences multiple sequence consensus
python-pbcore-doc_1.2.7+dfsg-1_all.deb Python library for processing PacBio data files (documentation)
python-pbcore_1.2.7+dfsg-1_all.deb Python library for processing PacBio data files
python-pbgenomicconsensus_2.0.0+20151210-1_all.deb Pacific Biosciences variant and consensus caller (Python 2)
python-pbh5tools-doc_0.8.0+dfsg-4_all.deb tools for manipulating HDF5 files produced by Pacific Biosciences (doc)
python-pbh5tools_0.8.0+dfsg-4_amd64.deb tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
python-pbkdf2_1.3+20110613.git2a0fb15~ds0-3_all.deb Python RSA PKCS#5 v2.0 module (Python 2)
python-pcapy_0.10.8-1build1_amd64.deb Python interface to the libpcap packet capture library
python-pcl-msgs_0.2.0-2_all.deb Python code for PCL-related Robot OS Messages
python-pcp_3.10.8build1_amd64.deb Performance Co-Pilot Python PMAPI module
python-pcs_0.6+debian-0ubuntu3_amd64.deb Packet Construction Set for Python
python-pdfminer_20140328+dfsg-1_all.deb PDF parser and analyser
python-pdfrw-doc_0.2-2_all.deb PDF file manipulation library (documentation)
python-pdfrw_0.2-2_all.deb PDF file manipulation library (Python 2)
Advertisement
Advertisement