python-nibabel_2.0.2-2_all.deb


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Description

python-nibabel - Python bindings to various neuroimaging data formats

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-nibabel
Package version: 2.0.2
Package release: 2
Package architecture: all
Package type: deb
Installed size: 61.86 KB
Download size: 1.87 MB
Official Mirror: archive.ubuntu.com
NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. This package also provides a commandline tools: - dicomfs - FUSE filesystem on top of a directory with DICOMs - nib-ls - 'ls' for neuroimaging files - parrec2nii - for conversion of PAR/REC to NIfTI images

Alternatives

    Download

    Source package: nibabel

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-nibabel deb package:
      # sudo apt-get install python-nibabel

    Files

    • /usr/bin/nib-dicomfs
    • /usr/bin/nib-ls
    • /usr/bin/nib-nifti-dx
    • /usr/bin/parrec2nii
    • /usr/lib/python2.7/dist-packages/nibabel-2.0.2.egg-info
    • /usr/lib/python2.7/dist-packages/nibabel/COMMIT_INFO.txt
    • /usr/lib/python2.7/dist-packages/nibabel/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/affines.py
    • /usr/lib/python2.7/dist-packages/nibabel/analyze.py
    • /usr/lib/python2.7/dist-packages/nibabel/arrayproxy.py
    • /usr/lib/python2.7/dist-packages/nibabel/arraywriters.py
    • /usr/lib/python2.7/dist-packages/nibabel/batteryrunners.py
    • /usr/lib/python2.7/dist-packages/nibabel/casting.py
    • /usr/lib/python2.7/dist-packages/nibabel/checkwarns.py
    • /usr/lib/python2.7/dist-packages/nibabel/data.py
    • /usr/lib/python2.7/dist-packages/nibabel/deprecated.py
    • /usr/lib/python2.7/dist-packages/nibabel/dft.py
    • /usr/lib/python2.7/dist-packages/nibabel/ecat.py
    • /usr/lib/python2.7/dist-packages/nibabel/environment.py
    • /usr/lib/python2.7/dist-packages/nibabel/eulerangles.py
    • /usr/lib/python2.7/dist-packages/nibabel/fileholders.py
    • /usr/lib/python2.7/dist-packages/nibabel/filename_parser.py
    • /usr/lib/python2.7/dist-packages/nibabel/fileslice.py
    • /usr/lib/python2.7/dist-packages/nibabel/funcs.py
    • /usr/lib/python2.7/dist-packages/nibabel/imageclasses.py
    • /usr/lib/python2.7/dist-packages/nibabel/imageglobals.py
    • /usr/lib/python2.7/dist-packages/nibabel/info.py
    • /usr/lib/python2.7/dist-packages/nibabel/keywordonly.py
    • /usr/lib/python2.7/dist-packages/nibabel/loadsave.py
    • /usr/lib/python2.7/dist-packages/nibabel/minc.py
    • /usr/lib/python2.7/dist-packages/nibabel/minc1.py
    • /usr/lib/python2.7/dist-packages/nibabel/minc2.py
    • /usr/lib/python2.7/dist-packages/nibabel/mriutils.py
    • /usr/lib/python2.7/dist-packages/nibabel/nifti1.py
    • /usr/lib/python2.7/dist-packages/nibabel/nifti2.py
    • /usr/lib/python2.7/dist-packages/nibabel/onetime.py
    • /usr/lib/python2.7/dist-packages/nibabel/openers.py
    • /usr/lib/python2.7/dist-packages/nibabel/optpkg.py
    • /usr/lib/python2.7/dist-packages/nibabel/orientations.py
    • /usr/lib/python2.7/dist-packages/nibabel/parrec.py
    • /usr/lib/python2.7/dist-packages/nibabel/pkg_info.py
    • /usr/lib/python2.7/dist-packages/nibabel/py3k.py
    • /usr/lib/python2.7/dist-packages/nibabel/quaternions.py
    • /usr/lib/python2.7/dist-packages/nibabel/rstutils.py
    • /usr/lib/python2.7/dist-packages/nibabel/spaces.py
    • /usr/lib/python2.7/dist-packages/nibabel/spatialimages.py
    • /usr/lib/python2.7/dist-packages/nibabel/spm2analyze.py
    • /usr/lib/python2.7/dist-packages/nibabel/spm99analyze.py
    • /usr/lib/python2.7/dist-packages/nibabel/tmpdirs.py
    • /usr/lib/python2.7/dist-packages/nibabel/trackvis.py
    • /usr/lib/python2.7/dist-packages/nibabel/tripwire.py
    • /usr/lib/python2.7/dist-packages/nibabel/volumeutils.py
    • /usr/lib/python2.7/dist-packages/nibabel/wrapstruct.py
    • /usr/lib/python2.7/dist-packages/nibabel/benchmarks/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/benchmarks/bench_array_to_file.py
    • /usr/lib/python2.7/dist-packages/nibabel/benchmarks/bench_fileslice.py
    • /usr/lib/python2.7/dist-packages/nibabel/benchmarks/bench_finite_range.py
    • /usr/lib/python2.7/dist-packages/nibabel/benchmarks/bench_load_save.py
    • /usr/lib/python2.7/dist-packages/nibabel/benchmarks/butils.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/netcdf.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/ordereddict.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/six.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/tests/test_netcdf.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/tests/test_ordereddict.py
    • /usr/lib/python2.7/dist-packages/nibabel/externals/tests/data/example_1.nc
    • /usr/lib/python2.7/dist-packages/nibabel/freesurfer/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/freesurfer/io.py
    • /usr/lib/python2.7/dist-packages/nibabel/freesurfer/mghformat.py
    • /usr/lib/python2.7/dist-packages/nibabel/freesurfer/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/freesurfer/tests/test_io.py
    • /usr/lib/python2.7/dist-packages/nibabel/freesurfer/tests/test_mghformat.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/gifti.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/giftiio.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/parse_gifti_fast.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/util.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/test_gifti.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/test_giftiio.py
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/data/ascii.gii
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/data/base64bin.gii
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/data/gzipbase64.gii
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/data/label.gii
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/data/rh.aparc.annot.gii
    • /usr/lib/python2.7/dist-packages/nibabel/gifti/tests/data/rh.shape.curv.gii
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/csareader.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/dicomreaders.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/dicomwrappers.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/dwiparams.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/structreader.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/utils.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data_pkgs.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/test_csareader.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/test_dicomreaders.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/test_dicomwrappers.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/test_dwiparams.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/test_structreader.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/test_utils.py
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/4d_multiframe_test.dcm
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/csa2_b0.bin
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/csa2_b1000.bin
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/csa2_zero_len.bin.gz
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/csa_slice_norm.dcm
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/csa_str_200n_items.bin
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/csa_str_valid.bin
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/decimal_rescale.dcm
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/philips_mprage.dcm.gz
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/siemens_dwi_0.dcm.gz
    • /usr/lib/python2.7/dist-packages/nibabel/nicom/tests/data/siemens_dwi_1000.dcm.gz
    • /usr/lib/python2.7/dist-packages/nibabel/testing/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/__init__.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/nibabel_data.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/scriptrunner.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_affines.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_analyze.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_api_validators.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_arrayproxy.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_arraywriters.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_batteryrunners.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_casting.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_checkwarns.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_data.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_deprecated.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_dft.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_ecat.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_ecat_data.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_endiancodes.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_environment.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_euler.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_filehandles.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_fileholders.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_filename_parser.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_files_interface.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_fileslice.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_floating.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_funcs.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_helpers.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_image_api.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_image_load_save.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_imageglobals.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_keywordonly.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_loadsave.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_minc1.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_minc2.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_minc2_data.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_mriutils.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_nibabel_data.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_nifti1.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_nifti2.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_openers.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_orientations.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_parrec.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_parrec_data.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_proxy_api.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_quaternions.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_recoder.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_round_trip.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_rstutils.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_scaling.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_scripts.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_spaces.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_spatialimages.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_spm2analyze.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_spm99analyze.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_testing.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_tmpdirs.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_trackvis.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_tripwire.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_utils.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/test_wrapstruct.py
    • /usr/lib/python2.7/dist-packages/nibabel/tests/data/0.dcm
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    • /usr/share/doc/python-nibabel/changelog.Debian.gz
    • /usr/share/doc/python-nibabel/copyright
    • /usr/share/man/man1/nib-dicomfs.1.gz
    • /usr/share/man/man1/nib-ls.1.gz
    • /usr/share/man/man1/nib-nifti-dx.1.gz
    • /usr/share/man/man1/parrec2nii.1.gz

    Changelog

    2015-11-30 - Yaroslav Halchenko <debian@onerussian.com> nibabel (2.0.2-2) unstable; urgency=medium * debian/tests/control: needs python3-nibabel for testing itself

    2015-11-23 - Yaroslav Halchenko <debian@onerussian.com> nibabel (2.0.2-1) unstable; urgency=medium * Fresh upstream bugfix release * debian/tests - provided ADT tests based on RFed to be used without modifications runner from patsy

    2015-11-02 - Yaroslav Halchenko <debian@onerussian.com> nibabel (2.0.1-3) unstable; urgency=medium * debian/patches - changeset_ea65e90a97fc8c9929b6a93d6c5657111489573b.diff cherry-picked from upstream to resolve issues with Python 3.5 doctest machinery which lead to FTBFS whenever optional pydicom wasn't avail (Closes: #802408) - deb_localmathjax to use locally available mathjax

    2015-08-24 - Yaroslav Halchenko <debian@onerussian.com> nibabel (2.0.1-2) unstable; urgency=medium * Remove installed scripts before running install again. Should really close #784697

    2015-06-28 - Yaroslav Halchenko <debian@onerussian.com> nibabel (2.0.1-1) unstable; urgency=medium * Fresh upstream release * debian/rules - First install for python3 and then for python2 to get correct shebang in nib-ls (Closes: #784697)

    2014-12-09 - Yaroslav Halchenko <debian@onerussian.com> nibabel (2.0.0-1) experimental; urgency=medium * New upstream release with lots of cool new features, which has minor API breakage * debian/watch - fixed up for github * debian/control - build-depend and depend for -doc package on mathjax. There is nothing else we could do to make sphinx generate docs to use system-wide avail mathjax - policy boost to 3.9.6

    2014-08-05 - Yaroslav Halchenko <debian@onerussian.com> nibabel (1.3.0+git476-g3ca7b94-1) neurodebian-devel; urgency=medium * New snapshot from 1.3.0-466-g27e4feb in preparation to new upstream release. * debian/control - added python-six and python-matplotlib (for documentation) to build-depends * debian/{control,rules} - drop pysupport in favor of dh*_python - add python3-nibabel

    2014-03-20 - Yaroslav Halchenko <debian@onerussian.com> nibabel (1.3.0-2) sid; urgency=medium * Upload to sid (the freeze is long over ;)) * debian/control - boosted policy to 3.9.5

    2012-09-11 - Yaroslav Halchenko <debian@onerussian.com> nibabel (1.3.0-1) experimental; urgency=low * New upstream release

    2012-06-27 - Yaroslav Halchenko <debian@onerussian.com> nibabel (1.2.2-1) unstable; urgency=low * New upstream bugfix release - addresses import and test failures on power7 (powerpc) causing FTBFS of nipy.

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