python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_amd64.deb


Advertisement

Description

python-kineticstools - detection of DNA modifications (Python 2 library)

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-kineticstools
Package version 0.5.1+20150828+git3aa3d96+dfsg
Package release 1
Package architecture amd64
Package type deb
Installed size 101.93 KB
Download size 96.59 MB
Official Mirror archive.ubuntu.com
Tools for detecting DNA modifications from single molecule, real-time (SMRT®)
sequencing data. This tool implements the P_ModificationDetection module in
SMRT® Portal, used by the RS_Modification_Detection and
RS_Modifications_and_Motif_Detection protocol. Researchers interested in
understanding or extending the modification detection algorithms can use these
tools as a starting point.
This package is part of the SMRTAnalysis suite and contains the backend
Python 2 library.

Alternatives

Package Version Architecture Repository
python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_i386.deb 0.5.1+20150828+git3aa3d96+dfsg i386 Ubuntu Universe
python-kineticstools - - -

Requires

Name Value
libc6 >= 2.2.5
python >= 2.7~
python << 2.8
python-h5py -
python-numpy -
python-pbcommand -
python-pbcore -
python-scipy -
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_amd64.deb
Source Package kineticstools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-kineticstools deb package:
    # sudo apt-get install python-kineticstools

Files

Path
/usr/lib/python2.7/dist-packages/bin/__init__.py
/usr/lib/python2.7/dist-packages/bin/copyIpdSummaryDataset.py
/usr/lib/python2.7/dist-packages/bin/testShared.py
/usr/lib/python2.7/dist-packages/bin/writeSummaryToCmp.py
/usr/lib/python2.7/dist-packages/kineticsTools/BasicLdaEnricher.py
/usr/lib/python2.7/dist-packages/kineticsTools/KineticWorker.py
/usr/lib/python2.7/dist-packages/kineticsTools/MedakaLdaEnricher.py
/usr/lib/python2.7/dist-packages/kineticsTools/MixtureEstimationMethods.py
/usr/lib/python2.7/dist-packages/kineticsTools/ModificationDecode.py
/usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteCommon.py
/usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteDetection.py
/usr/lib/python2.7/dist-packages/kineticsTools/PositiveControlEnricher.py
/usr/lib/python2.7/dist-packages/kineticsTools/ReferenceUtils.py
/usr/lib/python2.7/dist-packages/kineticsTools/ResultWriter.py
/usr/lib/python2.7/dist-packages/kineticsTools/WorkerProcess.py
/usr/lib/python2.7/dist-packages/kineticsTools/__init__.py
/usr/lib/python2.7/dist-packages/kineticsTools/ipdModel.py
/usr/lib/python2.7/dist-packages/kineticsTools/ipdSummary.py
/usr/lib/python2.7/dist-packages/kineticsTools/pipelineTools.py
/usr/lib/python2.7/dist-packages/kineticsTools/sharedArray.py
/usr/lib/python2.7/dist-packages/kineticsTools/summarizeModifications.py
/usr/lib/python2.7/dist-packages/kineticsTools/tree_predict.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/not-zip-safe
/usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/kineticsTools/resources/C2.h5
/usr/lib/python2.7/dist-packages/kineticsTools/resources/P4-C2.h5
/usr/lib/python2.7/dist-packages/kineticsTools/resources/P5-C3.h5
/usr/lib/python2.7/dist-packages/kineticsTools/resources/P6-C4.h5
/usr/lib/python2.7/dist-packages/kineticsTools/resources/XL-C2.h5
/usr/lib/python2.7/dist-packages/kineticsTools/resources/XL-XL.h5
/usr/lib/python2.7/dist-packages/kineticsTools/resources/unknown.h5
/usr/share/doc/python-kineticstools/changelog.Debian.gz
/usr/share/doc/python-kineticstools/copyright

Changelog

2015-12-09 - Afif Elghraoui <afif@ghraoui.name>
kineticstools (0.5.1+20150828+git3aa3d96+dfsg-1) unstable; urgency=low
* Initial release (Closes: #797676)

See Also

Package Description
python-kinterbasdb_3.3.0-3_amd64.deb Python DB API 2.0 extension for Firebird and Interbase
python-kitchen_1.1.1-1_all.deb Python library of containers, text and i18n helpers
python-kivy-examples_1.9.0-3build1_all.deb Kivy - Multimedia / Multitouch framework in Python (examples)
python-kivy_1.9.0-3build1_amd64.deb Kivy - Multimedia / Multitouch framework in Python (Python 2)
python-kiwi_1.9.22-4_all.deb a graphical framework to construct simple UI
python-kjbuckets_1.0.0-16_amd64.deb Set and graph data types for Python
python-kml_1.3.0-1_amd64.deb Library to manipulate KML 2.2 OGC standard files - Python extension
python-kmodpy_0.1.10-2_amd64.deb Python binding for kmod
python-koan_2.4.1-0ubuntu2_all.deb kickstart-over-a-network (koan) - python libraries
python-kolab_1.0.2-10ubuntu6_amd64.deb Python bindings for Kolab Library
python-kolabformat_1.1.2-0ubuntu3_amd64.deb Python bindings for Kolab Format 3.0 XML parsing
python-krbv_1.0.90-1_amd64.deb Python extension module for Kerberos 5
python-ktoblzcheck_1.48-2.1_all.deb library for verification of account numbers and bank codes (Python bindings)
python-kzorp_3.9.5-7_all.deb Python bindings for kzorp
python-laditools_1.1.0-2_all.deb Python module to control and monitor the LADI system
Advertisement
Advertisement