python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_amd64.deb


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Description

python-kineticstools - detection of DNA modifications (Python 2 library)

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-kineticstools
Package version: 0.5.1+20150828+git3aa3d96+dfsg
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 101.93 KB
Download size: 96.59 MB
Official Mirror: archive.ubuntu.com
Tools for detecting DNA modifications from single molecule, real-time (SMRT®) sequencing data. This tool implements the P_ModificationDetection module in SMRT® Portal, used by the RS_Modification_Detection and RS_Modifications_and_Motif_Detection protocol. Researchers interested in understanding or extending the modification detection algorithms can use these tools as a starting point. This package is part of the SMRTAnalysis suite and contains the backend Python 2 library.

    Download

    Source package: kineticstools

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-kineticstools deb package:
      # sudo apt-get install python-kineticstools

    Files

    • /usr/lib/python2.7/dist-packages/bin/__init__.py
    • /usr/lib/python2.7/dist-packages/bin/copyIpdSummaryDataset.py
    • /usr/lib/python2.7/dist-packages/bin/testShared.py
    • /usr/lib/python2.7/dist-packages/bin/writeSummaryToCmp.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/BasicLdaEnricher.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/KineticWorker.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/MedakaLdaEnricher.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/MixtureEstimationMethods.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/ModificationDecode.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteCommon.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteDetection.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/PositiveControlEnricher.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/ReferenceUtils.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/ResultWriter.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/WorkerProcess.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/__init__.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/ipdModel.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/ipdSummary.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/pipelineTools.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/sharedArray.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/summarizeModifications.py
    • /usr/lib/python2.7/dist-packages/kineticsTools/tree_predict.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/entry_points.txt
    • /usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/not-zip-safe
    • /usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/kineticsTools-0.5.1.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/kineticsTools/resources/C2.h5
    • /usr/lib/python2.7/dist-packages/kineticsTools/resources/P4-C2.h5
    • /usr/lib/python2.7/dist-packages/kineticsTools/resources/P5-C3.h5
    • /usr/lib/python2.7/dist-packages/kineticsTools/resources/P6-C4.h5
    • /usr/lib/python2.7/dist-packages/kineticsTools/resources/XL-C2.h5
    • /usr/lib/python2.7/dist-packages/kineticsTools/resources/XL-XL.h5
    • /usr/lib/python2.7/dist-packages/kineticsTools/resources/unknown.h5
    • /usr/share/doc/python-kineticstools/changelog.Debian.gz
    • /usr/share/doc/python-kineticstools/copyright

    Changelog

    2015-12-09 - Afif Elghraoui <afif@ghraoui.name> kineticstools (0.5.1+20150828+git3aa3d96+dfsg-1) unstable; urgency=low * Initial release (Closes: #797676)

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