python-hyphy_2.2.6+dfsg-3build3_amd64.deb


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Description

python-hyphy - Hypothesis testing using Phylogenies (Python 2 module)

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-hyphy
Package version 2.2.6+dfsg
Package release 3build3
Package architecture amd64
Package type deb
Installed size 2.08 KB
Download size 800.92 KB
Official Mirror archive.ubuntu.com
HyPhy is an open-source software package for the analysis of genetic
sequences using techniques in phylogenetics, molecular evolution, and
machine learning. It features a complete graphical user interface (GUI)
and a rich scripting language for limitless customization of analyses.
Additionally, HyPhy features support for parallel computing environments
(via message passing interface) and it can be compiled as a shared
library and called from other programming environments such as Python or
R.  Continued development of HyPhy is currently supported in part by an
NIGMS R01 award 1R01GM093939.
This package provides files the Python 2 module.

Alternatives

Package Version Architecture Repository
python-hyphy_2.2.6+dfsg-3build3_i386.deb 2.2.6+dfsg i386 Ubuntu Universe
python-hyphy - - -

Requires

Name Value
hyphy-common -
libc6 >= 2.14
libgcc1 >= 1:3.0
libgomp1 >= 4.9
libsqlite3-0 >= 3.5.9
libstdc++6 >= 4.1.1
python >= 2.7~
python << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-hyphy_2.2.6+dfsg-3build3_amd64.deb
Source Package hyphy

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-hyphy deb package:
    # sudo apt-get install python-hyphy

Files

Path
/usr/lib/python2.7/dist-packages/HyPhy-0.1.1.egg-info
/usr/lib/python2.7/dist-packages/_HyPhy.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/HyPhy/__init__.py
/usr/share/doc/python-hyphy/changelog.Debian.gz
/usr/share/doc/python-hyphy/copyright
/usr/share/doc/python-hyphy/examples/HBL
/usr/share/doc/python-hyphy/examples/Python/BasicHyPhy.py

Changelog

2016-02-06 - Matthias Klose <doko@ubuntu.com>
hyphy (2.2.6+dfsg-3build3) xenial; urgency=medium
* No-change rebuild for openmpi on s390x.
2016-02-01 - Matthias Klose <doko@ubuntu.com>
hyphy (2.2.6+dfsg-3build2) xenial; urgency=medium
* No-change rebuild for openmpi transition.
2016-01-18 - Matthias Klose <doko@ubuntu.com>
hyphy (2.2.6+dfsg-3build1) xenial; urgency=medium
* No-change rebuild to drop python3.4 support.
2015-12-30 - Andreas Tille <tille@debian.org>
hyphy (2.2.6+dfsg-3) unstable; urgency=medium
* Change build-dep on python3-dev to python3-all-dev to enable building for
all supported python3 versions (thanks to Scott Kitterman
<debian@kitterman.com> for the patch)
Closes: #809452
2015-10-26 - Andreas Tille <tille@debian.org>
hyphy (2.2.6+dfsg-2) unstable; urgency=medium
[ Matthias Klose ]
* Hand-edit swig generated file to build with Python3.5.
Closes: #802999
[ Andreas Tille ]
* Remove arch specific flags
Closes: #802994
2015-09-22 - Andreas Tille <tille@debian.org>
hyphy (2.2.6+dfsg-1) unstable; urgency=medium
* New upstream version
* Hack around a mac-ism in setup.py
2015-07-23 - Andreas Tille <tille@debian.org>
hyphy (2.2.5+dfsg-2) unstable; urgency=medium
* Versioned Build-Depends: cmake (>= 3.0)
* Drop profiling option (Thanks for the hint to Michael Banck
<mbanck@debian.org>)
Closes: #793345
* Disable unneded test that breaks on 32 bit architectures (Thanks for
the hint to Jakub Wilk <jwilk@debian.org>)
Closes: #793346
* Make sure that also in tests the existence of SSE3 extension is done
Closes: #793344
2015-07-11 - Andreas Tille <tille@debian.org>
hyphy (2.2.5+dfsg-1) unstable; urgency=low
* Initial release (Closes: #792087)

See Also

Package Description
python-hypothesis_3.0.1-1_all.deb advanced Quickcheck style testing library for Python 2
python-iapws_1.1.1-2_all.deb Python implementation of the international APWS-IF97 steam tables
python-ibm-db-sa_2.0.5-0ubuntu2_all.deb SQLAlchemy support for IBM Data Servers - Python 2.x
python-icalendar-doc_3.8-1_all.deb parser/generator of iCalendar files for use with Python -- docs
python-icalendar_3.8-1_all.deb parser/generator of iCalendar files for use with Python2
python-id3_1.2-6.3_all.deb Python module for id3-tags manipulation
python-ieee1284_0.2.11-12_amd64.deb Python bindings to libieee1284
python-igraph_0.7.1post6-0ubuntu2_amd64.deb High performance graph data structures and algorithms
python-ijson_2.3-1_all.deb event-driven JSON parser (Python 2 version)
python-image-geometry_1.11.11+ds-1_all.deb image_geometry Robot OS package - Python bindings
python-imaging-doc-html_1.1.2-1.1ubuntu1_all.deb Documentation for the Python Imaging Library
python-imaging-doc-pdf_1.1.2-1.1ubuntu1_all.deb Documentation for the Python Imaging Library
python-imaging_3.1.2-0ubuntu1_all.deb Python Imaging Library compatibility layer
python-imaplib2_2.53-1_all.deb Threaded Python IMAP4 client
python-imdbpy_5.0-1_amd64.deb Python package to access the IMDb's movie database
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