python-freecontact_1.1-2_amd64.deb


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Description

python-freecontact - fast protein contact predictor - binding for Python

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-freecontact
Package version 1.1
Package release 2
Package architecture amd64
Package type deb
Installed size 165 B
Download size 79.75 KB
Official Mirror archive.ubuntu.com
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
This package contains the Python binding.

Alternatives

Package Version Architecture Repository
python-freecontact_1.1-2_i386.deb 1.1 i386 Ubuntu Universe
python-freecontact - - -

Requires

Name Value
libboost-python1.58.0 -
libc6 >= 2.14
libfreecontact0v5 -
libgcc1 >= 1:4.1.1
libstdc++6 >= 5.2
python << 2.8
python >= 2.7~

Download

Type URL
Binary Package python-freecontact_1.1-2_amd64.deb
Source Package python-freecontact

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-freecontact deb package:
    # sudo apt-get install python-freecontact

Files

Path
/usr/lib/python2.7/dist-packages/freecontact.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/python_freecontact-1.1.egg-info
/usr/share/doc/python-freecontact/changelog.Debian.gz
/usr/share/doc/python-freecontact/copyright
/usr/share/doc/python-freecontact/examples/demo_1000.aln.gz

Changelog

2015-08-21 - Andreas Tille <tille@debian.org>
python-freecontact (1.1-2) unstable; urgency=medium
* cme fix dpkg-control
* add myself to Uploaders
* Priority: optional
* DEP5 fix
* once libboost-python-dev will be provided for Python3 we could have
a python3-freecontact package and this is prepared but not activated
2013-07-17 - Laszlo Kajan <lkajan@debian.org>
python-freecontact (1.1-1) unstable; urgency=low
* Initial release (Closes: #723771).

See Also

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