python-freecontact_1.1-2_amd64.deb


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Description

python-freecontact - fast protein contact predictor - binding for Python

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-freecontact
Package version: 1.1
Package release: 2
Package architecture: amd64
Package type: deb
Installed size: 165 B
Download size: 79.75 KB
Official Mirror: archive.ubuntu.com
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. This package contains the Python binding.

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    Source package: python-freecontact

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-freecontact deb package:
      # sudo apt-get install python-freecontact

    Files

    • /usr/lib/python2.7/dist-packages/freecontact.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/python_freecontact-1.1.egg-info
    • /usr/share/doc/python-freecontact/changelog.Debian.gz
    • /usr/share/doc/python-freecontact/copyright
    • /usr/share/doc/python-freecontact/examples/demo_1000.aln.gz

    Changelog

    2015-08-21 - Andreas Tille <tille@debian.org> python-freecontact (1.1-2) unstable; urgency=medium * cme fix dpkg-control * add myself to Uploaders * Priority: optional * DEP5 fix * once libboost-python-dev will be provided for Python3 we could have a python3-freecontact package and this is prepared but not activated

    2013-07-17 - Laszlo Kajan <lkajan@debian.org> python-freecontact (1.1-1) unstable; urgency=low * Initial release (Closes: #723771).

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