python-dipy_0.10.1-1_all.deb


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Description

python-dipy - toolbox for analysis of MR diffusion imaging data

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-dipy
Package version 0.10.1
Package release 1
Package architecture all
Package type deb
Installed size 5.66 KB
Download size 2.34 MB
Official Mirror archive.ubuntu.com
Dipy is a toolbox for the analysis of diffusion magnetic resonance
imaging data. It features:
- Reconstruction algorithms, e.g. GQI, DTI
- Tractography generation algorithms, e.g. EuDX
- Intelligent downsampling of tracks
- Ultra fast tractography clustering
- Resampling datasets with anisotropic voxels to isotropic
- Visualizing multiple brains simultaneously
- Finding track correspondence between different brains
- Warping tractographies into another space, e.g. MNI space
- Reading many different file formats, e.g. Trackvis or NIfTI
- Dealing with huge tractographies without memory restrictions
- Playing with datasets interactively without storing

Alternatives

Package Version Architecture Repository
python-dipy_0.14.0-1~nd16.04+1_all.deb 0.14.0 all NeuroDebian Main
python-dipy_0.14.0-1~nd16.04+1_all.deb 0.14.0 all NeuroDebian Main
python-dipy_0.10.1-1_all.deb 0.10.1 all Ubuntu Universe
python-dipy - - -

Requires

Name Value
python << 2.8
python >= 2.7
python-dipy-lib >= 0.10.1-1
python-numpy >= 1:1.7.1~
python-scipy -

Provides

Name Value
python2.7-dipy -

Download

Type URL
Binary Package python-dipy_0.10.1-1_all.deb
Source Package dipy

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-dipy deb package:
    # sudo apt-get install python-dipy

Files

Path
/usr/bin/dipy_fit_tensor
/usr/bin/dipy_peak_extraction
/usr/bin/dipy_quickbundles
/usr/bin/dipy_sh_estimate
/usr/lib/python2.7/dist-packages/dipy-0.10.1.egg-info
/usr/lib/python2.7/dist-packages/dipy/COMMIT_INFO.txt
/usr/lib/python2.7/dist-packages/dipy/__config__.py
/usr/lib/python2.7/dist-packages/dipy/__init__.py
/usr/lib/python2.7/dist-packages/dipy/info.py
/usr/lib/python2.7/dist-packages/dipy/pkg_info.py
/usr/lib/python2.7/dist-packages/dipy/align/__init__.py
/usr/lib/python2.7/dist-packages/dipy/align/imaffine.py
/usr/lib/python2.7/dist-packages/dipy/align/imwarp.py
/usr/lib/python2.7/dist-packages/dipy/align/metrics.py
/usr/lib/python2.7/dist-packages/dipy/align/reslice.py
/usr/lib/python2.7/dist-packages/dipy/align/scalespace.py
/usr/lib/python2.7/dist-packages/dipy/align/streamlinear.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/__init__.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_crosscorr.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_expectmax.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_imaffine.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_imwarp.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_metrics.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_parzenhist.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_reslice.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_scalespace.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_sumsqdiff.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_transforms.py
/usr/lib/python2.7/dist-packages/dipy/align/tests/test_vector_fields.py
/usr/lib/python2.7/dist-packages/dipy/boots/__init__.py
/usr/lib/python2.7/dist-packages/dipy/boots/resampling.py
/usr/lib/python2.7/dist-packages/dipy/core/__init__.py
/usr/lib/python2.7/dist-packages/dipy/core/geometry.py
/usr/lib/python2.7/dist-packages/dipy/core/gradients.py
/usr/lib/python2.7/dist-packages/dipy/core/graph.py
/usr/lib/python2.7/dist-packages/dipy/core/histeq.py
/usr/lib/python2.7/dist-packages/dipy/core/ndindex.py
/usr/lib/python2.7/dist-packages/dipy/core/onetime.py
/usr/lib/python2.7/dist-packages/dipy/core/optimize.py
/usr/lib/python2.7/dist-packages/dipy/core/profile.py
/usr/lib/python2.7/dist-packages/dipy/core/rng.py
/usr/lib/python2.7/dist-packages/dipy/core/sphere.py
/usr/lib/python2.7/dist-packages/dipy/core/sphere_stats.py
/usr/lib/python2.7/dist-packages/dipy/core/subdivide_octahedron.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/__init__.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/test_geometry.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/test_gradients.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/test_graph.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/test_ndindex.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/test_optimize.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/test_sphere.py
/usr/lib/python2.7/dist-packages/dipy/core/tests/test_subdivide_octahedron.py
/usr/lib/python2.7/dist-packages/dipy/data/__init__.py
/usr/lib/python2.7/dist-packages/dipy/data/fetcher.py
/usr/lib/python2.7/dist-packages/dipy/data/files/55dir_grad.bval
/usr/lib/python2.7/dist-packages/dipy/data/files/55dir_grad.bvec
/usr/lib/python2.7/dist-packages/dipy/data/files/C.npy
/usr/lib/python2.7/dist-packages/dipy/data/files/C1.pkl.gz
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/usr/lib/python2.7/dist-packages/dipy/data/files/dsi4169_b_table.txt
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/usr/lib/python2.7/dist-packages/dipy/data/files/evenly_distributed_sphere_724.npz
/usr/lib/python2.7/dist-packages/dipy/data/files/fib0.pkl.gz
/usr/lib/python2.7/dist-packages/dipy/data/files/fib1.pkl.gz
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/usr/lib/python2.7/dist-packages/dipy/data/files/gtab_isbi2013_2shell.txt
/usr/lib/python2.7/dist-packages/dipy/data/files/gtab_taiwan_dsi.txt
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/usr/lib/python2.7/dist-packages/dipy/data/files/repulsion100.npz
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/usr/lib/python2.7/dist-packages/dipy/data/files/small_64D.bvals.npy
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/usr/lib/python2.7/dist-packages/dipy/data/files/small_64D.nii
/usr/lib/python2.7/dist-packages/dipy/data/files/sphere_grad.txt
/usr/lib/python2.7/dist-packages/dipy/data/files/t1_coronal_slice.npy
/usr/lib/python2.7/dist-packages/dipy/data/files/test_piesno.nii.gz
/usr/lib/python2.7/dist-packages/dipy/data/files/tracks300.trk
/usr/lib/python2.7/dist-packages/dipy/denoise/__init__.py
/usr/lib/python2.7/dist-packages/dipy/denoise/nlmeans.py
/usr/lib/python2.7/dist-packages/dipy/denoise/noise_estimate.py
/usr/lib/python2.7/dist-packages/dipy/denoise/tests/__init__.py
/usr/lib/python2.7/dist-packages/dipy/denoise/tests/test_denoise.py
/usr/lib/python2.7/dist-packages/dipy/denoise/tests/test_nlmeans.py
/usr/lib/python2.7/dist-packages/dipy/denoise/tests/test_noise_estimate.py
/usr/lib/python2.7/dist-packages/dipy/direction/__init__.py
/usr/lib/python2.7/dist-packages/dipy/direction/peaks.py
/usr/lib/python2.7/dist-packages/dipy/direction/probabilistic_direction_getter.py
/usr/lib/python2.7/dist-packages/dipy/direction/tests/__init__.py
/usr/lib/python2.7/dist-packages/dipy/direction/tests/test_peaks.py
/usr/lib/python2.7/dist-packages/dipy/direction/tests/test_prob_direction_getter.py
/usr/lib/python2.7/dist-packages/dipy/external/__init__.py
/usr/lib/python2.7/dist-packages/dipy/external/fsl.py
/usr/lib/python2.7/dist-packages/dipy/external/tests/__init__.py
/usr/lib/python2.7/dist-packages/dipy/fixes/__init__.py
/usr/lib/python2.7/dist-packages/dipy/fixes/argparse.py
/usr/lib/python2.7/dist-packages/dipy/io/__init__.py
/usr/lib/python2.7/dist-packages/dipy/io/bvectxt.py
/usr/lib/python2.7/dist-packages/dipy/io/dpy.py
/usr/lib/python2.7/dist-packages/dipy/io/gradients.py
/usr/lib/python2.7/dist-packages/dipy/io/pickles.py
/usr/lib/python2.7/dist-packages/dipy/io/trackvis.py
/usr/lib/python2.7/dist-packages/dipy/io/utils.py
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/usr/lib/python2.7/dist-packages/dipy/io/tests/test_bvectxt.py
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/usr/lib/python2.7/dist-packages/dipy/io/tests/test_io.py
/usr/lib/python2.7/dist-packages/dipy/io/tests/test_io_gradients.py
/usr/lib/python2.7/dist-packages/dipy/reconst/__init__.py
/usr/lib/python2.7/dist-packages/dipy/reconst/base.py
/usr/lib/python2.7/dist-packages/dipy/reconst/cache.py
/usr/lib/python2.7/dist-packages/dipy/reconst/cross_validation.py
/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py
/usr/lib/python2.7/dist-packages/dipy/reconst/dki.py
/usr/lib/python2.7/dist-packages/dipy/reconst/dsi.py
/usr/lib/python2.7/dist-packages/dipy/reconst/dti.py
/usr/lib/python2.7/dist-packages/dipy/reconst/gqi.py
/usr/lib/python2.7/dist-packages/dipy/reconst/interpolate.py
/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py
/usr/lib/python2.7/dist-packages/dipy/reconst/multi_voxel.py
/usr/lib/python2.7/dist-packages/dipy/reconst/odf.py
/usr/lib/python2.7/dist-packages/dipy/reconst/peaks.py
/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py
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/usr/lib/python2.7/dist-packages/dipy/reconst/shore.py
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/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks/__init__.py
/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks/bench_bounding_box.py
/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks/bench_csd.py
/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks/bench_peaks.py
/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks/bench_squash.py
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/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_cross_validation.py
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/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_gqi.py
/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_interpolate.py
/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_mapmri.py
/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_mapmri_odf.py
/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_multi_voxel.py
/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_odf.py
/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_peak_finding.py
/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_peakdf.py
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/usr/lib/python2.7/dist-packages/dipy/segment/metric.py
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/usr/share/doc/dipy/examples/affine_registration_3d.py
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/usr/share/doc/dipy/examples/denoise_nlmeans.py
/usr/share/doc/dipy/examples/deterministic_fiber_tracking.py
/usr/share/doc/dipy/examples/gradients_spheres.py
/usr/share/doc/dipy/examples/introduction_to_basic_tracking.py
/usr/share/doc/dipy/examples/kfold_xval.py
/usr/share/doc/dipy/examples/linear_fascicle_evaluation.py
/usr/share/doc/dipy/examples/piesno.py
/usr/share/doc/dipy/examples/probabilistic_fiber_tracking.py
/usr/share/doc/dipy/examples/quick_start.py
/usr/share/doc/dipy/examples/reconst_csa.py
/usr/share/doc/dipy/examples/reconst_csa_parallel.py
/usr/share/doc/dipy/examples/reconst_csd.py
/usr/share/doc/dipy/examples/reconst_csd_parallel.py
/usr/share/doc/dipy/examples/reconst_dki.py
/usr/share/doc/dipy/examples/reconst_dsi.py
/usr/share/doc/dipy/examples/reconst_dsi_metrics.py
/usr/share/doc/dipy/examples/reconst_dsid.py
/usr/share/doc/dipy/examples/reconst_dti.py
/usr/share/doc/dipy/examples/reconst_gqi.py
/usr/share/doc/dipy/examples/reconst_mapmri.py
/usr/share/doc/dipy/examples/reconst_shore.py
/usr/share/doc/dipy/examples/reconst_shore_metrics.py
/usr/share/doc/dipy/examples/reslice_datasets.py
/usr/share/doc/dipy/examples/restore_dti.py
/usr/share/doc/dipy/examples/segment_clustering_features.py
/usr/share/doc/dipy/examples/segment_clustering_metrics.py
/usr/share/doc/dipy/examples/segment_extending_clustering_framework.py
/usr/share/doc/dipy/examples/segment_quickbundles.py
/usr/share/doc/dipy/examples/sfm_reconst.py
/usr/share/doc/dipy/examples/sfm_tracking.py
/usr/share/doc/dipy/examples/simulate_dki.py
/usr/share/doc/dipy/examples/simulate_multi_tensor.py
/usr/share/doc/dipy/examples/snr_in_cc.py
/usr/share/doc/dipy/examples/streamline_formats.py
/usr/share/doc/dipy/examples/streamline_length.py
/usr/share/doc/dipy/examples/streamline_tools.py
/usr/share/doc/dipy/examples/syn_registration_2d.py
/usr/share/doc/dipy/examples/syn_registration_3d.py
/usr/share/doc/dipy/examples/tracking_eudx_odf.py
/usr/share/doc/dipy/examples/tracking_eudx_tensor.py
/usr/share/doc/dipy/examples/tracking_quick_start.py
/usr/share/doc/dipy/examples/tracking_tissue_classifier.py
/usr/share/doc/dipy/examples/viz_advanced.py
/usr/share/doc/dipy/examples/viz_bundles.py
/usr/share/doc/dipy/examples/viz_slice.py
/usr/share/doc/dipy/examples/viz_widgets.py
/usr/share/doc/python-dipy/README.rst
/usr/share/doc/python-dipy/changelog.Debian.gz
/usr/share/doc/python-dipy/copyright

Changelog

2016-02-08 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.10.1-1) unstable; urgency=medium
[ Michael Hanke ]
* Upload to unstable (Closes: #785991).
* Update maintainer email.
* Modify build to enable reproducible build (Closes: #789747). Patch is
courtesy of Juan Picca <jumapico@gmail.com>.
[ Yaroslav Halchenko ]
* Fresh upstream release
* debian/patches/up_numpy_compat-PR858.patch - for compatibility with numpy
1:1.11.0~b2 
2015-03-19 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.9.2-1) experimental; urgency=medium
* New upstream release
* debian/control
- limit to python >= 2.7 to avoid problem while testing scripts while
having two Python versions supported
(see https://github.com/nipy/dipy/issues/354#issuecomment-69251564)
2015-01-07 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.8.0-1) experimental; urgency=medium
* New upstream release
* debian/{control,rules}
- migrated from using python-support
* debian/copyright
- various small tune ups to satisfy format
2014-12-29 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.7.1+git1225-gb048445-1) UNRELEASED; urgency=medium
* Fresh upstream snapshot
* debian/control
- added libgomp1 to b-depends to facilitate build/testing OPENMP code
- policy boost to 3.9.6
* debian/patches -- slight adjustments
* debian/rules
- clean away Cython generated files
2014-08-13 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.7.1-2) unstable; urgency=medium
[ Andreas Tille ]
* Team upload.
* Fix DEP5 format specification
* debian/control:
- Set Vcs fields to anonscm.debian.org
- Priority: optional
* debian/blends, debian/upstream/metadata: Move publication data
where they belong to
[ Yaroslav Halchenko ]
* Exclude peaksFromModelParallel from testing for now due to obscure
permission issue
2014-01-17 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.7.1-1) unstable; urgency=low
* New upstream release
* debian/patches
- dropping deb_interpreter_for_scripts_tests, changeset* patches --
adopted upstream
- adding up_AE_test_fixup_i386 to overcome test failures on 32bit
* debian/control
- boost policy to 3.9.5 (no further changes due)
2013-10-23 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.6.0-2) unstable; urgency=low
* Upload to unstable
2013-04-02 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.6.0-1) experimental; urgency=low
* New upstream release
- includes patches/up_explicit_cdefs_inits (dropped)
* debian/watch
- updated to fetch from github's tags
* debian/changelog
- updated years
* debian/source/options
- added to ignore generated COMMIT_INFO.txt
* debian/rules
- export http_proxy=http://127.0.0.1:9 to prevent any downloads
- point PATH to the installed bin/ for tests to test example scripts
- added cythonization so we could build backports with cython < 0.17.3
* debian/control
- provide X-Python-Version: >= 2.6 just to avoid warnings
- boosted policy to 3.9.4 (no further changes)
2011-09-20 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.5.0-3) unstable; urgency=low
* Added patch up_explicit_cdefs_inits to prevent FTBFS with cython >= 0.15
2011-07-01 - Yaroslav Halchenko <debian@onerussian.com>
dipy (0.5.0-2) unstable; urgency=low
* Upload to unstable
* Fixed binary-arch build -- extensions were not installed. Thanks Jiří
Keller for the report
* Fixed ${Python:depends} -> ${python:Depends} (thanks Lintian)
* Boosted policy to 3.9.2 (no changes are due)

See Also

Package Description
python-dirspec_13.10-1ubuntu1_all.deb Python User Folders Specification Library
python-diskimage-builder_1.0.0-1_all.deb image building tools for Openstack
python-distlib_0.2.2-1_all.deb low-level components of python distutils2/packaging
python-distorm3_3.3.0-3_all.deb powerful disassembler library for x86/AMD64 binary streams (Python bindings)
python-distro-info_0.14build1_all.deb information about distributions' releases (Python module)
python-distutils-extra_2.39-1_all.deb enhancements to the Python build system
python-django-adminaudit_0.3.3-1_all.deb improves the logging capabilities of Django's admin
python-django-app-plugins_0.1.1-2_all.deb plugin system for django
python-django-assets-doc_0.11-1_all.deb integrate webassets into Django applications (Documentation)
python-django-assets_0.11-1_all.deb integrate webassets into Django applications
python-django-auth-ldap-doc_1.2.7+dfsg-1_all.deb Django LDAP authentication backend (documentation)
python-django-auth-ldap_1.2.7+dfsg-1_all.deb Django LDAP authentication backend
python-django-auth-openid_0.5-2.3_all.deb provides optional OpenID integration for Django
python-django-authority_0.5-2_all.deb more powerful permission system for Django
python-django-babel-doc_0.4.0-1_all.deb Utilities for using Babel in Django - doc
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