python-dendropy_4.0.3+dfsg-1_all.deb


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Description

python-dendropy - DendroPy Phylogenetic Computing Library (Python 2)

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-dendropy
Package version 4.0.3+dfsg
Package release 1
Package architecture all
Package type deb
Installed size 63.25 KB
Download size 7.81 MB
Official Mirror archive.ubuntu.com
DendroPy is a Python library for phylogenetic computing. It provides
classes and functions for the simulation, processing, and manipulation
of phylogenetic trees and character matrices, and supports the reading
and writing of phylogenetic data in a range of formats, such as NEXUS,
NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing
some useful phylogenetic operations, such as data conversion and tree
posterior distribution summarization, are also distributed and installed
as part of the library. DendroPy can thus function as a stand-alone
library for phylogenetics, a component of more complex multi-library
phyloinformatic pipelines, or as a scripting “glue” that assembles and
drives such pipelines.
This package provides python2 modules.

Alternatives

Package Version Architecture Repository
python-dendropy_4.0.3+dfsg-1_all.deb 4.0.3+dfsg all Ubuntu Universe
python-dendropy - - -

Requires

Name Value
python-pkg-resources -
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-dendropy_4.0.3+dfsg-1_all.deb
Source Package python-dendropy

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-dendropy deb package:
    # sudo apt-get install python-dendropy

Files

Path
/usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/zip-safe
/usr/lib/python2.7/dist-packages/dendropy/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/__main__.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/mathfn.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/popgenstat.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/probability.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/statistics.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/treecompare.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/treemeasure.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/treescore.py
/usr/lib/python2.7/dist-packages/dendropy/calculate/treesum.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/fastareader.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/fastawriter.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/ioservice.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/newick.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/newickreader.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/newickwriter.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/newickyielder.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/nexmlreader.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/nexmlwriter.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/nexmlyielder.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/nexusprocessing.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/nexusreader.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/nexuswriter.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/nexusyielder.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/phylipreader.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/phylipwriter.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/tokenizer.py
/usr/lib/python2.7/dist-packages/dendropy/dataio/xmlprocessing.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/basemodel.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/charmatrixmodel.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/charstatemodel.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/datasetmodel.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/taxonmodel.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/treecollectionmodel.py
/usr/lib/python2.7/dist-packages/dendropy/datamodel/treemodel.py
/usr/lib/python2.7/dist-packages/dendropy/interop/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/interop/ape.py
/usr/lib/python2.7/dist-packages/dendropy/interop/biopython.py
/usr/lib/python2.7/dist-packages/dendropy/interop/entrez.py
/usr/lib/python2.7/dist-packages/dendropy/interop/ete.py
/usr/lib/python2.7/dist-packages/dendropy/interop/gbif.py
/usr/lib/python2.7/dist-packages/dendropy/interop/genbank.py
/usr/lib/python2.7/dist-packages/dendropy/interop/muscle.py
/usr/lib/python2.7/dist-packages/dendropy/interop/paup.py
/usr/lib/python2.7/dist-packages/dendropy/interop/raxml.py
/usr/lib/python2.7/dist-packages/dendropy/interop/rstats.py
/usr/lib/python2.7/dist-packages/dendropy/interop/seqgen.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/coalescent.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/continuous.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/ncbi.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/popgensim.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/popgenstat.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/reconcile.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/seqmodel.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/seqsim.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/treecalc.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/treemanip.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/treesim.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/treesplit.py
/usr/lib/python2.7/dist-packages/dendropy/legacy/treesum.py
/usr/lib/python2.7/dist-packages/dendropy/mathlib/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/mathlib/mathfn.py
/usr/lib/python2.7/dist-packages/dendropy/mathlib/probability.py
/usr/lib/python2.7/dist-packages/dendropy/mathlib/statistics.py
/usr/lib/python2.7/dist-packages/dendropy/model/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/model/birthdeath.py
/usr/lib/python2.7/dist-packages/dendropy/model/coalescent.py
/usr/lib/python2.7/dist-packages/dendropy/model/continuous.py
/usr/lib/python2.7/dist-packages/dendropy/model/discrete.py
/usr/lib/python2.7/dist-packages/dendropy/model/parsimony.py
/usr/lib/python2.7/dist-packages/dendropy/model/protractedspeciation.py
/usr/lib/python2.7/dist-packages/dendropy/model/reconcile.py
/usr/lib/python2.7/dist-packages/dendropy/model/treeshape.py
/usr/lib/python2.7/dist-packages/dendropy/simulate/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/simulate/charsim.py
/usr/lib/python2.7/dist-packages/dendropy/simulate/popgensim.py
/usr/lib/python2.7/dist-packages/dendropy/simulate/treesim.py
/usr/lib/python2.7/dist-packages/dendropy/test/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/test/__main__.py
/usr/lib/python2.7/dist-packages/dendropy/test/base_newick_test_cases.py
/usr/lib/python2.7/dist-packages/dendropy/test/base_standard_trees_parsing_test_cases.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_asciitree.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_birthdeath.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_coalescent.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_container_frozen_ordered_dict.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_container_normalized_bitmask_dict.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_container_ordered_set.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_continuous.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_basic_tree.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_fasta_reader.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_fasta_writer.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_rooting.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_tree.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_tree_iter.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_tree_list.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_writer.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_reader_chars.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_reader_tree_list.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_writer_chars.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_writer_trees.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_reader_chars.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_reader_dataset.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_reader_tree_list.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_taxon_handling.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_tree_yielder.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_chars.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_dataset.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_tree.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_tree_list.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_phylip_reader_chars.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_phylip_writer_chars.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_tokenizer.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_annotations.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_bipartitions.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_charmatrix.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_dataset.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_split_bitmasks.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_statealphabet.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_taxon.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_construction_copying_and_identity.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_edge_fundamentals.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_list.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_node_fundamentals.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_structure_and_iteration.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_taxon_management.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_treearray.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_fitch.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_parsimony_scoring.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_paup.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_popgenstat.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_statistics.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_tree_calculations_and_metrics.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_tree_from_splits.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_tree_operations_and_manipulations.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_tree_reconciliation_and_discordance.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_tree_split_compatibility.py
/usr/lib/python2.7/dist-packages/dendropy/test/test_tree_summarization_and_consensus.py
/usr/lib/python2.7/dist-packages/dendropy/test/benchmark/__init__.py
/usr/lib/python2.7/dist-packages/dendropy/test/benchmark/benchmark_newick_light_tree_parser.py
/usr/lib/python2.7/dist-packages/dendropy/test/benchmark/benchmark_newick_tree_parser.py
/usr/lib/python2.7/dist-packages/dendropy/test/benchmark/benchmark_tokenizer.py
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/COII_Apes.nex
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/GEBA.chars.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/actinopterygii.chars.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/angiosperms.chars.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/angiosperms.chars.txt
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.hacked-for-tests.txt
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.interleaved.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.nexml
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/avian-ovomucoids.chars.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/avian-ovomucoids.chars.txt
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/bad_names.fasta
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/caenophidia_mos.chars.fasta
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/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-all.nex
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-c1.nex
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-c2.nex
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-c3.nex
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/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.csv
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/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.beast.calibrated.xml
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/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-multiple.as_seqs.nexml
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/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.fasta
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/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.matchchar.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.multi.nexus
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.relaxed.phylip
/usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.simple.nexus
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/usr/lib/python2.7/dist-packages/dendropy/utility/textprocessing.py
/usr/lib/python2.7/dist-packages/dendropy/utility/timeprocessing.py
/usr/lib/python2.7/dist-packages/dendropy/utility/urlio.py
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/usr/lib/python2.7/dist-packages/dendropy/utility/libexec/__init__.py
/usr/share/doc/python-dendropy/README.Debian
/usr/share/doc/python-dendropy/changelog.Debian.gz
/usr/share/doc/python-dendropy/copyright

Changelog

2015-06-22 - Andreas Tille <tille@debian.org>
python-dendropy (4.0.3+dfsg-1) unstable; urgency=low
* Initial release (Closes: #790408)

See Also

Package Description
python-derpconf_0.7.3-1_all.deb Python module to abstract loading configuration files for your app
python-descartes_1.0.1-2_all.deb Matplotlib extension to work with geometric objects (Python2)
python-designate-dashboard_2.0.0-1_all.deb OpenStack DNS as a Service - dashboard plugin
python-designate_2.0.0-0ubuntu1_all.deb OpenStack DNS as a Service - Python libs
python-dexml_0.5.1-1_all.deb Dead-simple Object-XML mapper for Python
python-dfvfs_20160203-2_all.deb Digital Forensics Virtual File System
python-dhm_0.6-4_all.deb collection of Python utilities / helper
python-diagnostic-msgs_1.12.3-5_all.deb Messages relating to Robot OS diagnostic, Python interface
python-dialog_3.3.0-2_amd64.deb Python 2 module for making simple terminal-based user interfaces
python-diaspy-doc_0.5.0.1-2_all.deb unofficial interface to the Diaspora social network (documentation)
python-diaspy_0.5.0.1-2_all.deb unofficial interface to the Diaspora social network (Python 2)
python-dib-utils_0.0.6-1_all.deb Standalone tools related to diskimage-builder - Python 2.x
python-dicoclient_2.2-9_all.deb RFC 2229 compliant dictionary client module and shell
python-dicom-doc_0.9.9-2_all.deb DICOM medical file reading and writing (documentation)
python-dicom_0.9.9-2_all.deb DICOM medical file reading and writing (Python 2)
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