python-dendropy_4.0.3+dfsg-1_all.deb


Advertisement

Description

python-dendropy - DendroPy Phylogenetic Computing Library (Python 2)

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-dendropy
Package version: 4.0.3+dfsg
Package release: 1
Package architecture: all
Package type: deb
Installed size: 63.25 KB
Download size: 7.81 MB
Official Mirror: archive.ubuntu.com
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing some useful phylogenetic operations, such as data conversion and tree posterior distribution summarization, are also distributed and installed as part of the library. DendroPy can thus function as a stand-alone library for phylogenetics, a component of more complex multi-library phyloinformatic pipelines, or as a scripting “glue” that assembles and drives such pipelines. This package provides python2 modules.

Alternatives

    Download

    Source package: python-dendropy

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-dendropy deb package:
      # sudo apt-get install python-dendropy

    Files

    • /usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/PKG-INFO
    • /usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/dependency_links.txt
    • /usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/entry_points.txt
    • /usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/requires.txt
    • /usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/top_level.txt
    • /usr/lib/python2.7/dist-packages/DendroPy-4.0.3.egg-info/zip-safe
    • /usr/lib/python2.7/dist-packages/dendropy/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/__main__.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/mathfn.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/popgenstat.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/probability.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/statistics.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/treecompare.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/treemeasure.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/treescore.py
    • /usr/lib/python2.7/dist-packages/dendropy/calculate/treesum.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/fastareader.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/fastawriter.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/ioservice.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/newick.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/newickreader.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/newickwriter.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/newickyielder.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/nexmlreader.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/nexmlwriter.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/nexmlyielder.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/nexusprocessing.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/nexusreader.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/nexuswriter.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/nexusyielder.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/phylipreader.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/phylipwriter.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/tokenizer.py
    • /usr/lib/python2.7/dist-packages/dendropy/dataio/xmlprocessing.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/basemodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/charmatrixmodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/charstatemodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/datasetmodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/taxonmodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/treecollectionmodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/datamodel/treemodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/ape.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/biopython.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/entrez.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/ete.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/gbif.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/genbank.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/muscle.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/paup.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/raxml.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/rstats.py
    • /usr/lib/python2.7/dist-packages/dendropy/interop/seqgen.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/coalescent.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/continuous.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/ncbi.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/popgensim.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/popgenstat.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/reconcile.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/seqmodel.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/seqsim.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/treecalc.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/treemanip.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/treesim.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/treesplit.py
    • /usr/lib/python2.7/dist-packages/dendropy/legacy/treesum.py
    • /usr/lib/python2.7/dist-packages/dendropy/mathlib/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/mathlib/mathfn.py
    • /usr/lib/python2.7/dist-packages/dendropy/mathlib/probability.py
    • /usr/lib/python2.7/dist-packages/dendropy/mathlib/statistics.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/birthdeath.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/coalescent.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/continuous.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/discrete.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/parsimony.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/protractedspeciation.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/reconcile.py
    • /usr/lib/python2.7/dist-packages/dendropy/model/treeshape.py
    • /usr/lib/python2.7/dist-packages/dendropy/simulate/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/simulate/charsim.py
    • /usr/lib/python2.7/dist-packages/dendropy/simulate/popgensim.py
    • /usr/lib/python2.7/dist-packages/dendropy/simulate/treesim.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/__main__.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/base_newick_test_cases.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/base_standard_trees_parsing_test_cases.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_asciitree.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_birthdeath.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_coalescent.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_container_frozen_ordered_dict.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_container_normalized_bitmask_dict.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_container_ordered_set.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_continuous.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_basic_tree.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_fasta_reader.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_fasta_writer.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_rooting.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_tree.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_tree_iter.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_reader_tree_list.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_newick_writer.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_reader_chars.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_reader_tree_list.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_writer_chars.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexml_writer_trees.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_reader_chars.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_reader_dataset.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_reader_tree_list.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_taxon_handling.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_tree_yielder.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_chars.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_dataset.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_tree.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_nexus_writer_tree_list.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_phylip_reader_chars.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_phylip_writer_chars.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_dataio_tokenizer.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_annotations.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_bipartitions.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_charmatrix.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_dataset.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_split_bitmasks.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_statealphabet.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_taxon.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_construction_copying_and_identity.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_edge_fundamentals.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_list.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_node_fundamentals.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_structure_and_iteration.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_tree_taxon_management.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_datamodel_treearray.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_fitch.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_parsimony_scoring.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_paup.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_popgenstat.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_statistics.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_tree_calculations_and_metrics.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_tree_from_splits.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_tree_operations_and_manipulations.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_tree_reconciliation_and_discordance.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_tree_split_compatibility.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/test_tree_summarization_and_consensus.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/benchmark/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/benchmark/benchmark_newick_light_tree_parser.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/benchmark/benchmark_newick_tree_parser.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/benchmark/benchmark_tokenizer.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/COII_Apes.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/GEBA.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/actinopterygii.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/angiosperms.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/angiosperms.chars.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.hacked-for-tests.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/apternodus.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/avian-ovomucoids.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/avian-ovomucoids.chars.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/bad_names.fasta
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/caenophidia_mos.chars.fasta
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/caenophidia_mos.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/caenophidia_mos.chars.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/cetaceans.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/codons.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-all.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-c1.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-c2.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/interleaved-charsets-c3.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/orti.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.csv
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.fasta
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.simple.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.simple.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.subsets-1stpos.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.subsets-2ndpos.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.subsets-3rdpos.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.subsets-all.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.subsets-coding.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/primates.chars.subsets-noncoding.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.beast.calibrated.xml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.beast.uncalibrated.xml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.fasta
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.phylip
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae.chars.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae_continuous.chars.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae_continuous.chars.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/pythonidae_continuous.chars.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-continuous.as_cells.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-continuous.as_seqs.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-continuous.interleaved.phylip
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-continuous.mesquite.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-continuous.mesquite.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-continuous.relaxed.phylip
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.as_cells.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.as_seqs.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.basic.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.fasta
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.matchchar.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.multi.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.relaxed.phylip
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-dna.simple.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-generic.as_cells.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-generic.as_seqs.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-generic.basic.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-generic.dotted.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-generic.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-generic.relaxed.phylip
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-generic.simple.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-multiple-char-blocks.1.basic.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-multiple.as_cells.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-multiple.as_seqs.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.as_cells.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.as_seqs.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.basic.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.fasta
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.matchchar.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.multi.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.relaxed.phylip
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-protein.simple.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.as_cells.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.as_seqs.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.basic.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.fasta
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.interleaved.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.matchchar.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.multi.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.relaxed.phylip
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/chars/standard-test-chars-rna.simple.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/mixed/GEBA.mixed.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/mixed/geospiza.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/mixed/multitaxa_mesquite.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/mixed/reference_single_taxonset_dataset.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/mixed/standard-test-mixed.1.basic.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/APG_Angiosperms.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/APG_Angiosperms.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/Bininda-emonds_2007_mammals.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/Bininda-emonds_2007_mammals.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/GEBA.tree.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/GEBA.tree.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/Jetz_et_al_2012_Aves.sample.tree.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/Jetz_et_al_2012_Aves.sample.tree.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/Smith_2001_angiosperms.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/Smith_2001_angiosperms.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/apternodus.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/bipartition_encoding_fixture.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/bird_orders.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/bird_orders.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-01.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-02.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.no-clock.mcmc.weighted-03.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-01.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-02.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-03.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.raxml.bootstraps.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-01.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-02.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.raxml.bootstraps.weighted-03.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/cetaceans.taxa.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/curated-with-translate-block-and-internal-taxa.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/curated-with-translate-block-and-no-taxa-block-and-untranslated-internal-taxa.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/curated-with-translate-block-and-no-taxa-block.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/curated-with-translate-block-and-untranslated-internal-taxa.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/deepcoal1.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus-metadata-comments.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-rooted.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-multifurcating-unrooted.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n12-x2.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n12-x2.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n12-x2.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n12-x2.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus-metadata-comments.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.json
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/feb032009.splits.csv
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/feb032009.trees.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/feb032009.trees.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/hiv1.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/hiv1.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_rooted.paup-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_rooted.pre-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_rooted.pruned_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_rooted.retained_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_unrooted.paup-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_unrooted.pre-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_unrooted.pruned_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/incomplete_leaves_unrooted.retained_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/issue_mth_2009-02-03.rooted.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/issue_mth_2009-02-03.unrooted.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/maj-rule-bug1.trees.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/maj-rule-bug2.trees.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/multitreeblocks.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/multitreeblocks2.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/primates.beast.mcct.meanh.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/primates.beast.mcct.medianh.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/primates.beast.mcct.noedgelens.tree
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/primates.beast.mcmc.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/primates.trees.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_rooted.dendropy-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_rooted.paup-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_rooted.pre-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_rooted.pruned_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_rooted.retained_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_unrooted.dendropy-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_unrooted.paup-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_unrooted.pre-pruned.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_unrooted.pruned_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/prune_unrooted.retained_taxa.txt
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.annotated.bad.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.annotated.nexml
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.beast.mcmc.trees
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.beast.summary.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mb.con
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mb.run1.t
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mb.run2.t
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mb.run3.t
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mb.run4.t
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mlboots.newick.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mlboots.nexus.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mle.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.mle.nex
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.random.bd0301.randomly-rooted.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.random.bd0301.tre
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.reference-trees.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.reference-trees.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-block.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/pythonidae.reference-trees.taxon-numbers-only.newick
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/rana.trees.nexus
    • /usr/lib/python2.7/dist-packages/dendropy/test/data/trees/treebase_s373.xml
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/compare_and_validate.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/coverage_analysis.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/curated_dataset.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/curated_test_tree.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/curated_test_tree_list.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/dendropytest.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/mockrandom.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/mockreader.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/pathmap.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/paupsplitsreference.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/standard_file_test_chars.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/standard_file_test_datasets.py
    • /usr/lib/python2.7/dist-packages/dendropy/test/support/standard_file_test_trees.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/__init__.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/bibtex.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/bitprocessing.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/cli.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/constants.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/container.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/debug.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/deprecate.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/error.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/filesys.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/messaging.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/metavar.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/processio.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/terminal.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/textprocessing.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/timeprocessing.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/urlio.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/vcsinfo.py
    • /usr/lib/python2.7/dist-packages/dendropy/utility/libexec/__init__.py
    • /usr/share/doc/python-dendropy/README.Debian
    • /usr/share/doc/python-dendropy/changelog.Debian.gz
    • /usr/share/doc/python-dendropy/copyright

    Changelog

    2015-06-22 - Andreas Tille <tille@debian.org> python-dendropy (4.0.3+dfsg-1) unstable; urgency=low * Initial release (Closes: #790408)

    Advertisement
    Advertisement